Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2144 ATGGACTTTCCGGTTCAAATGGATTCTGCTCTGGACAATTTACAACCAAGTTCTTATCAAAGTAGTGAGTTTGCAAAGGCTGCTTCTAGCACCAAAGGTCCTGATGAGCATTCCTCAGTGATAAACTCATCATATGGATCAAAGGGAAGCCAAAACCTTTTGATTTCTGATGCATCAAACCTTGTTCCTGATGAGCAATCTCCAGCTGTTGGTCATAATAGTGCTCTCAGTATTCTCGGATCTTGGGGTAATCATCGTAACCAAACCTCAATCTCAGTAGGACTTGAAGCAAAGGGAAAAGCTGATACTAAGTACAGTGATGGAGCCTTGTTAGAATCTTCTTCCCTATGCTCCCTTGCAGCCTCAAATAACAGAAATGTGTGTAGTAGGAAACATGATGGCATTGATTACTCAAAGCATTTAAGTGATAATGGCAAAGAAGCAGAAGATGTAGTGAAGGAAAAGCCTGCTCGGGAAGGCACCGGAGTGAAGAGAAGTAGGAATTCAGAAGTTCATAATTTGTGTGAAAGGAAACGAAGAGATAAGATCAACAAGAGGATCCGTATATTGAAGGAGCTCATACCCAACTGCAACAAGACGGACAAAGCTTCAATGCTTGATGATGCCATTGAATATCTTAAGACCCTCAAGCTTCAGTTAGAGATTATGTCAATGGGTGGTGGATTTTGCATGCCTTTGATGATGTTACCTAATGCATCTCATCTTATGATCAAGGCACCCCATTTGCACCAGTTAATGGGAGTTGGAATGGGGTTAAGGCCAGGCACAACCATCCCTATGACACCTTTGCCTGCAATCACTGACAACAGAGCTCAAATGTTTCATTTCCCTAACCAAGTGCCCACCATGCACCCTTCTCATGCACCTTTCATTCCAATGGTTGGAAATCCTTGTACACAAACCCCTCTTGCAACTGGCACAGCTACCAACATGGCTGAAAACCTTCCCAGTTAG 975 0.4297 MDFPVQMDSALDNLQPSSYQSSEFAKAASSTKGPDEHSSVINSSYGSKGSQNLLISDASNLVPDEQSPAVGHNSALSILGSWGNHRNQTSISVGLEAKGKADTKYSDGALLESSSLCSLAASNNRNVCSRKHDGIDYSKHLSDNGKEAEDVVKEKPAREGTGVKRSRNSEVHNLCERKRRDKINKRIRILKELIPNCNKTDKASMLDDAIEYLKTLKLQLEIMSMGGGFCMPLMMLPNASHLMIKAPHLHQLMGVGMGLRPGTTIPMTPLPAITDNRAQMFHFPNQVPTMHPSHAPFIPMVGNPCTQTPLATGTATNMAENLPS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2144 324 CDD bHLH_AtPIF_like 167 229 - -
Pvu7g2144 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 226 IPR036638 GO:0046983
Pvu7g2144 324 PANTHER TRANSCRIPTION FACTOR PIF3 1 322 IPR044273 GO:0003700|GO:0006355
Pvu7g2144 324 SMART finulus 173 222 IPR011598 GO:0046983
Pvu7g2144 324 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Pvu7g2144 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Pvu7g2144 324 MobiDBLite consensus disorder prediction 10 45 - -
Pvu7g2144 324 MobiDBLite consensus disorder prediction 139 171 - -
Pvu7g2144 324 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 322 - -
Pvu7g2144 324 MobiDBLite consensus disorder prediction 1 45 - -
Pvu7g2144 324 Gene3D - 163 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2144 Pvu-Chr7 44725941 44728234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2144 130 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 56.897 2.14e-34 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu7g2144 HLH 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2144 K12126 - gmx:100818543 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2144 7 44725941 44728234 Pvu7g2144 7 44725941 44728234 ECH
Pvu1g2263 1 48136109 48138918 Pvu7g2144 7 44725941 44728234 PCT