Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2117 ATGAGGGTAGTGAAAATGAAATGGCATGCTGTTGCTTCGTGGACTTGGGATGCCCAGGATGAAACATGTGGGATTTGTAGGATGGCCTTTGATGGGTGTTGTCCTGACTGTAAACTTCCGGGGGACGACTGCCCATTGATTTGGGGTGTGTGCAATCACGCATTTCATTTACACTGTATCCTGAAGTGGGTGAATTCTCAGACATCACAAGCTCATTGCCCCATGTGCCGTCGGGAGTGGCAGTTTAAAGGGTGA 255 0.4902 MRVVKMKWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2117 84 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 5 83 - -
Pvu7g2117 84 ProSiteProfiles Zinc finger RING-type profile. 34 77 IPR001841 -
Pvu7g2117 84 SUPERFAMILY RING/U-box 2 83 - -
Pvu7g2117 84 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 1 83 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Pvu7g2117 84 CDD RING-H2_APC11 20 82 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Pvu7g2117 84 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Pvu7g2117 84 PANTHER RING BOX 5 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2117 Pvu-Chr7 44471186 44472744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2117 34 77 C3H Transcription Factor Family AT1G72220 41.304 1.27e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2117 K03358 - gmx:100775777 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2117 7 44471186 44472744 Pvu7g2117 7 44471186 44472744 ECH