Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2116 ATGACTAGGCAGAAAGTGAAACTTGCCTATATCAGTGATGTGACTGCAAGAAAATCCACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGTGAACTCACGATTCTGTGTGGGATCCCAGCCTGTGCTATAATTGCAAGTCCTTTTGAAGCTAAGCCGGAGATTTGGCCAGATCCAGAGGGAGCCAAGCAAGTGATTCAGAGGTATTTGGATGCATCTGTGATAGATGAAAGCAAGAATGTGAATCAAGAGAGTTTCCTCATGCAGAAGATTGCCAAAGCCCAGGAACAGCTGAAGAAACTGCGTCAGGAAAACCAAGAAAAGGAGAAGATCTTGTCTATGTTCAAGTACATGCAAGGTGAAGAAGACCTCCCAACTGATGTTCAAGAACTGAAACAACTCAACAAGCTCATTGAGAACAGTATGAAGGAAACTAAGAACAAGATGGATGAGCTCAATTGTGAGTCTATGTAG 480 0.425 MTRQKVKLAYISDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIIASPFEAKPEIWPDPEGAKQVIQRYLDASVIDESKNVNQESFLMQKIAKAQEQLKKLRQENQEKEKILSMFKYMQGEEDLPTDVQELKQLNKLIENSMKETKNKMDELNCESM* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2116 159 Coils Coil 130 159 - -
Pvu7g2116 159 PANTHER MADS BOX PROTEIN 2 154 - -
Pvu7g2116 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu7g2116 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pvu7g2116 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu7g2116 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu7g2116 159 Coils Coil 86 113 - -
Pvu7g2116 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Pvu7g2116 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Pvu7g2116 159 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pvu7g2116 159 Gene3D - 13 157 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2116 Pvu-Chr7 44468132 44468611 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2116 3 141 Type I MADS-box Gene Family AT1G65300 42.553 6.79e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu7g2116 SRF-TF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2116 - - var:108325536 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2116 7 44468132 44468611 Pvu7g2116 7 44468132 44468611 ECH