Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2114 ATGAGTAGGAAGAAATTGAAACTTGCTTTTATCTCTAATGACATGGCAAGGAAAACCACGTACAAGAGAAGGAAGAAGGGTATCATGAAGAAGGTGGATGAACTGGCCACCCTCTGCGGGATCTCAGCTTGTGCTGTAATTTCTAATCCTTTTGATTCTGAGACAGAAGTTTGGCCAAATCCAGAAGGAGTGAACAAGGTGATGGAGAGGTTTAAGAATGCATCTGTGCTAAACAAAAGCAGGAATGTGAACCACGAAAGCTTCATGATGCAAAGGATCGTGAAAGCACAAAATGAATTGAAGATGCAACGTGAAGAGAACTACGAGAAGGAGATTACCTTGTCCATGTTTCAGTTCATGCAAGGTCAAAACCTGCCAAGTACCGTTGAAGAAATCAAAGAAATCCACAAAATGATTGAGAAAAATATAAAAGAGATTGAGAATAAGTTGGCTGCACTCCACTGTGAGTCATGA 474 0.4051 MSRKKLKLAFISNDMARKTTYKRRKKGIMKKVDELATLCGISACAVISNPFDSETEVWPNPEGVNKVMERFKNASVLNKSRNVNHESFMMQRIVKAQNELKMQREENYEKEITLSMFQFMQGQNLPSTVEEIKEIHKMIEKNIKEIENKLAALHCES* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2114 157 Coils Coil 129 156 - -
Pvu7g2114 157 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Pvu7g2114 157 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pvu7g2114 157 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Pvu7g2114 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu7g2114 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu7g2114 157 PANTHER MADS BOX PROTEIN 3 153 - -
Pvu7g2114 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu7g2114 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pvu7g2114 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 153 - -
Pvu7g2114 157 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2114 Pvu-Chr7 44450746 44451219 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2114 3 123 Type I MADS-box Gene Family AT1G65330 47.541 3.27e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu7g2114 SRF-TF 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2114 - - var:108324686 214.927