Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2080 ATGGAGAAGAAAGAGGAGATAACGCTTCCATTGCCATTCCAGACCCATCTCAAGGGCCTTCTTAATGTTTCCTCCACTGCAACCTCTGCTGGCTCCCACAAACAACACTGTTCTCCGGCTGATGACTCCGACAGCTTCTATGATAAACTCTTTGACTTGTTGGACTCTTCTGGCCTCACTCTCGTTTTCAATGTCCGAGAAACATTGCTGGACTTGTACCTGTTTTACCTGGAGGTGACAAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAGTGGGGTGAAGTTGTCATAGCCTTGAAATTGGAAGGGAATAGTGTGCAGTTATGTGCTCAAGTTGAAAGGCTTTACTCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGAAGTCCTGTAAAGCAAGTTCCCATATCTATCAGCAACGAAGGTCCACTTAGGAAGAAGAGGATCTCAAATGCAAGTTTGCCTCATACAATGGATGGTAAAGATGATCAGAAGAAGGCCACGGAAATGTCCAAGCAATACTCTTGCCACATGACAGGGCCCGGGTATGTGCAACAGCCTGTGTTTTTACCAACACCTTCGAAAGAAAAAAAGAAACGCCGAGGTGCCCCGGTGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCACGGTTGAAAACTTGTAATGAGGCCTTAGATGGAAAAATACTAAGTATGGCTATTCATTCATGGAGGACTATGTCTGATATTGCGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAAAAAATCAAGGAAGCAATGGTTAGCCACAGTAAACAGCAGAAAACCGAAGATACCAGGGAAGAGAAGTGGTCTAGTATGTGTGGTGATTACCATGTAACTTTGCATCCTGAGGCAGATGACTGTTAG 921 0.443 MEKKEEITLPLPFQTHLKGLLNVSSTATSAGSHKQHCSPADDSDSFYDKLFDLLDSSGLTLVFNVRETLLDLYLFYLEVTRRGGYHQVGREKKWGEVVIALKLEGNSVQLCAQVERLYSHLLYQFEQLYFYRSPVKQVPISISNEGPLRKKRISNASLPHTMDGKDDQKKATEMSKQYSCHMTGPGYVQQPVFLPTPSKEKKKRRGAPVGRKTAYQIFLKHECARLKTCNEALDGKILSMAIHSWRTMSDIAKQPYVEESKKNKEKIKEAMVSHSKQQKTEDTREEKWSSMCGDYHVTLHPEADDC* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2080 306 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
Pvu7g2080 306 SMART bright_3 41 131 IPR001606 GO:0003677
Pvu7g2080 306 Gene3D - 24 145 IPR036431 GO:0003677
Pvu7g2080 306 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 23 304 - -
Pvu7g2080 306 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Pvu7g2080 306 SMART ARID_2 37 126 - -
Pvu7g2080 306 SUPERFAMILY HMG-box 191 272 IPR036910 -
Pvu7g2080 306 SUPERFAMILY ARID-like 38 138 IPR036431 GO:0003677
Pvu7g2080 306 Gene3D High mobility group box domain 196 274 IPR036910 -
Pvu7g2080 306 Coils Coil 257 277 - -
Pvu7g2080 306 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 23 304 - -
Pvu7g2080 306 MobiDBLite consensus disorder prediction 267 287 - -
Pvu7g2080 306 CDD HMGB-UBF_HMG-box 208 271 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2080 42 274 ARID Transcription Factor Family AT3G13350 25.000 6.88e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu7g2080 ARID 2.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2080 - - pvu:PHAVU_007G202100g 622.083