Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2073 ATGGAAAATTTTTACAAGCTGAACTCTCTCCTGTCTTGTTCCGAGGATGTTGTTAGAGAAGTCAACGTCAACGTTTCCGGTACTGCTGCATCTGAATTGAATCTAGGACTGGTGGCCAATAACTTCCTTCAGCTGGAAGAGCCAGAAAGTTCTGAACGGTTCATCAAGACCCAGATCGCCACTCACCCTCTTTATCCAAGTCTAGTATCTGCTTACATAGAATGCCGAAAGGTTGGAGCACCGCCAGAACTCGCTTCACTTCTTGAAGAAATAGCCCGTGAAAACCACCCAACGGTTCCTCTTCGTGAGATAGGAGATGATCCTGAGCTTGACGAGTTCATGGAATCATACTGCGAAGTTCTACATAGATACACGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACATTGGCATTGCCACTGAATAACAACCGCTCAGCATTCTTGTCAGATGAGGCAGCTGGGACATCAGAGGATGAATTCAGTTGGGAGAAGATGGAAGCAGTGGAAGTTCAGGAATCTTCTGGCTCCCGCCCCGGTGATCAAGAGCTTAAAGAAATGCTCCTTCATAAGTATGGTGGTTATCTTAGCAGCTTAAGGAAGGAATTTTTAAAGAAAAGGAAAAAGGGTAAACTTCCAAAGGAGGCAAGGAGGATACTCTTGGACTGGTGGAGCACCCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACGGGTCTGGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCCATTATGGATGGTGTAAATGGCAGCGCCATAGGAAGAGGACCTATGTAG 918 0.4542 MENFYKLNSLLSCSEDVVREVNVNVSGTAASELNLGLVANNFLQLEEPESSERFIKTQIATHPLYPSLVSAYIECRKVGAPPELASLLEEIARENHPTVPLREIGDDPELDEFMESYCEVLHRYTQELSKPFNEATLFLCSIESQLSNLCKGTLALPLNNNRSAFLSDEAAGTSEDEFSWEKMEAVEVQESSGSRPGDQELKEMLLHKYGGYLSSLRKEFLKKRKKGKLPKEARRILLDWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVNGSAIGRGPM* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2073 305 SMART KNOX2_2 100 151 IPR005541 GO:0003677|GO:0005634
Pvu7g2073 305 Pfam KNOX1 domain 55 96 IPR005540 GO:0003677|GO:0005634
Pvu7g2073 305 SUPERFAMILY Homeodomain-like 222 293 IPR009057 -
Pvu7g2073 305 SMART KNOX1_2 53 97 IPR005540 GO:0003677|GO:0005634
Pvu7g2073 305 SMART ELK_2 200 221 IPR005539 GO:0003677
Pvu7g2073 305 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Pvu7g2073 305 Pfam KNOX2 domain 104 150 IPR005541 GO:0003677|GO:0005634
Pvu7g2073 305 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Pvu7g2073 305 CDD homeodomain 232 284 IPR001356 GO:0003677
Pvu7g2073 305 Pfam ELK domain 200 221 IPR005539 GO:0003677
Pvu7g2073 305 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Pvu7g2073 305 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 294 - -
Pvu7g2073 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 294 - -
Pvu7g2073 305 SMART HOX_1 222 287 IPR001356 GO:0003677
Pvu7g2073 305 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Pvu7g2073 305 Gene3D - 218 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2073 Pvu-Chr7 44065734 44069963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2073 55 296 Homeobox Transcription Factor Family AT1G70510 54.000 1.76e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pvu7g2073 KNOX2 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2073 - - var:108324363 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2073 7 44065734 44069963 Pvu7g2073 7 44065734 44069963 ECH
Pvu1g2326 1 48669744 48675615 Pvu7g2073 7 44065734 44069963 PCT