Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2060 ATGGGAAGCTCTAGCAGGAAGAAGGAGCAAGATCTGGAGTTCGAGAAAGTTCGCTTAATCAGTTTAGCTCTCGATTTCGGCTTCGACGAATCCTCTGCCAACAAATGCCTCCACCGTCTCATCTCTCTCTACGGGGAGGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTTCTCGTGACTCTAGCGGAGTCGATGCAGGCCACTGAAGATTGGGATGACCTTCAGGAAATGGAATCACAAGCGTGCGGAACCTTGACGCACGTGCTCGACAAAACCGTTGCCCCGGGTGCCCATGCGGATAACGACCACGCTTCGAGAAGCTTCATTAATGTCGTTGGCGACTCGCCTCAACCGCAGAAACGCCGCGCTAATGTAGTCGAGTTGGATTCGAGTGACGACGAGGATATGCACTGTAGTGTTCCTAGGGGAAAATCTGTGGATTACAGAAGTGGCATCACTCAAGGCTCCGTTTCATCAACTTCCAGTAAAATGCAATCCTCCTTTGCATCAAGGGATAAAAGCGGTACTCTCAATTACGAAGAATTGCAAGCTCTAGATGATATTGAATTGGCCAATGTTGTTATCTTTGGTAATAGTACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCCTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTTACTGTAGTTGTATCTCCATTACTCTCTCTCATTCAGGATCAGATAATAACACTAAACCTCAAGTTTGGTGTACCAGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGGCCACAGCTGTGCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTATATTTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTGGAGATTCTAAAATGCATGCATCGGAAGGGACAACTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTCAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCAAAACTTTCCAGATGTACCAGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGAGGACGTATTAAATGCTCTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGTTTTGACAGACCAAATTTGAAGTATGAAGTGATTGGTAAGACAAAGGAACCACTAAAGCAGCTTGGACAGCTACTAGTTGATCGCTTCAGGAACCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCTAAATTTTTTAATGAGAAATGCAAGATCAAAACAGTGTATTACCATGCTGGCTTGGCTGCTCGGCAGAGAGTAGCTGCTCAAAAGAAATGGCATGATGGGGAGGTCCATATTGTGTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCAGTTTGCATTGCTCTTTACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGTCAGGGATATAAAAAGGAAAGTTTTAAGAGGGCAATGGTTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATGAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTCGGGGAATCTTTTGACAGAAAATCCTGCAAATATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGTATTATGA 1821 0.4388 MGSSSRKKEQDLEFEKVRLISLALDFGFDESSANKCLHRLISLYGEDGRDFITVEHCGDDFLVTLAESMQATEDWDDLQEMESQACGTLTHVLDKTVAPGAHADNDHASRSFINVVGDSPQPQKRRANVVELDSSDDEDMHCSVPRGKSVDYRSGITQGSVSSTSSKMQSSFASRDKSGTLNYEELQALDDIELANVVIFGNSTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGVPATFLNSQQTASQATAVLQELRKDKPSCKLLYLTPERIAGNQSFLEILKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPDVPVMALTATATHAVREDVLNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLVDRFRNQCGIVYCLSKSECVEVSKFFNEKCKIKTVYYHAGLAARQRVAAQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCMIRNGQGYKKESFKRAMVQAKKMQEYCEMKVECRRQTLLKHFGESFDRKSCKYGSSPCDNCLKTVL* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2060 606 Gene3D - 162 396 IPR027417 -
Pvu7g2060 606 CDD SF2_C_RecQ 397 530 - -
Pvu7g2060 606 Gene3D - 397 605 IPR027417 -
Pvu7g2060 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 411 564 IPR001650 -
Pvu7g2060 606 PANTHER DNA HELICASE RECQ FAMILY MEMBER 32 604 - -
Pvu7g2060 606 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 328 337 IPR002464 -
Pvu7g2060 606 SMART helicmild6 439 521 IPR001650 -
Pvu7g2060 606 Pfam DEAD/DEAH box helicase 207 375 IPR011545 GO:0003676|GO:0005524
Pvu7g2060 606 Pfam Helicase conserved C-terminal domain 414 520 IPR001650 -
Pvu7g2060 606 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 199 604 IPR004589 GO:0004386|GO:0006310
Pvu7g2060 606 PANTHER BLOOM SYNDROME PROTEIN 32 604 - -
Pvu7g2060 606 MobiDBLite consensus disorder prediction 153 173 - -
Pvu7g2060 606 SMART ultradead3 201 405 IPR014001 -
Pvu7g2060 606 Pfam RecQ zinc-binding 533 602 IPR032284 -
Pvu7g2060 606 CDD DEXHc_RecQ 199 396 - -
Pvu7g2060 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 389 IPR014001 -
Pvu7g2060 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 542 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2060 Pvu-Chr7 43968932 43975174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2060 429 519 Eukaryotic Initiation Factors Gene Family AT5G11170 31.868 1.15e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2060 K10899 - gmx:100806070 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2060 7 43968932 43975174 Pvu7g2060 7 43968932 43975174 ECH