Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2057 ATGTCGTATCGCCCAAGCGGGAACTCCAGGACCGATGTCCGCCGGAACCGGTACAAGGTGGCGGTGGACGCCGAGGAAGGTCGGAGACGGCGAGAAGACACCATGGTGGAGATCCGGAAGAACCGCAGAGAGGAGAGTTTGCAGAAGAAGAGGCGCGAAGGGCTCCAGCCTCAACAGATTCCTGCTTCCGTTCACTCTACTTTGGTAGAGAAGAAGTTGGAACACCTTCCATCAATGGTTGCTGGTGTTTGGACTGAGGACAATAACCTGCAACTCGAGGCAACGACTCAGTTTAGGAAGCTGCTTTCGATTGAACGAAGTCCTCCGATTGAGGAGGTTATTCAGACCGGTGTAGTTTCTCGGTTTGTCGAATTTCTGATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCTGCTTGGGCTTTGACAAATATAGCTTCTGGAACCTCTGAAAACACCAAGGTGGTGATTGACCATGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCCAGTGATGATGTCCGTGAACAGGCGGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGTCGGGACCTTGTTCTCGGTCATGGGGCATTGATTCCTTTGTTAGCACAATTGAACGAACAGGCCAAGCTTTCTATGCTTAGAAATGCTACTTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTGCCTGCTCTTGCACGTCTTATCCATTCAAATGATGAAGAAGTCTTGACTGATGCATGTTGGGCACTGTCATATCTTTCTGATGGTACAAATGATAAAATCCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTGATGCATCCATCCCCTTCAGTACTAATTCCTGCTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGGTTATCATCAATCATCAGGCTCTTGCTTGCCTTCTGAATCTGTTGACCAATAATTACAAAAAAAGCATTAAGAAGGAAGCTTGTTGGACTATATCAAATATTACAGCTGGGAATAAACAGCAGATTCAGTCTGTGATTGAGGCTAATTTAATTACTCCTCTGGTCAACTTACTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCGTGGGCTATCTCAAATGCTACATCCGGTGGTTCCCATGAACAAATCAAGTTCCTAGTAAGTCAAGGGTGTATTAAACCCTTGTGTGATCTTCTCATCTGTCCCGACCCCAGGATTGTGACAGTTTGCCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAGTATTGGCAACACTGGTGATGTGAATCTATATGCCCAAATCATTGATGACGCTGAGGGGCTGGAGAAAATTGAGAACCTCCAGAGTCATGACAATACAGAGATTTATGAAAAGGCGGTGAAGATTCTTGAGACATATTGGTTGGAGGAGGATGACGAGACTATGCCTCCTGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTAACAATGACGCTCCTGCTGTGCCTTCCGGTGGATTTAACTTTAATTAG 1599 0.4634 MSYRPSGNSRTDVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQIPASVHSTLVEKKLEHLPSMVAGVWTEDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALACLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQSVIEANLITPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKSIGNTGDVNLYAQIIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDETMPPGDASQSGFNFGNNDAPAVPSGGFNFN* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2057 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Pvu7g2057 532 PIRSF Importin_alpha 6 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pvu7g2057 532 SUPERFAMILY ARM repeat 10 501 IPR016024 -
Pvu7g2057 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Pvu7g2057 532 Gene3D - 13 52 IPR036975 GO:0006606
Pvu7g2057 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Pvu7g2057 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Pvu7g2057 532 PANTHER IMPORTIN ALPHA 2 522 - -
Pvu7g2057 532 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Pvu7g2057 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Pvu7g2057 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Pvu7g2057 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Pvu7g2057 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Pvu7g2057 532 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Pvu7g2057 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Pvu7g2057 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Pvu7g2057 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Pvu7g2057 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Pvu7g2057 532 SMART arm_5 275 315 IPR000225 GO:0005515
Pvu7g2057 532 SMART arm_5 106 147 IPR000225 GO:0005515
Pvu7g2057 532 SMART arm_5 149 189 IPR000225 GO:0005515
Pvu7g2057 532 SMART arm_5 360 400 IPR000225 GO:0005515
Pvu7g2057 532 SMART arm_5 234 273 IPR000225 GO:0005515
Pvu7g2057 532 SMART arm_5 403 443 IPR000225 GO:0005515
Pvu7g2057 532 SMART arm_5 317 358 IPR000225 GO:0005515
Pvu7g2057 532 SMART arm_5 190 232 IPR000225 GO:0005515
Pvu7g2057 532 MobiDBLite consensus disorder prediction 40 60 - -
Pvu7g2057 532 Gene3D - 74 497 IPR011989 -
Pvu7g2057 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2057 Pvu-Chr7 43954342 43959212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2057 153 422 U-box Gene Family AT1G23030 22.963 3.27e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2057 K15042 - gmx:100797267 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2057 7 43954342 43959212 Pvu7g2057 7 43954342 43959212 ECH
Pvu1g2341 1 48795703 48801991 Pvu7g2057 7 43954342 43959212 ECH
Pvu7g2057 7 43954342 43959212 Pvu1g2341 1 48795703 48801991 ECH
Pvu9g2619 9 36613426 36618617 Pvu7g2057 7 43954342 43959212 ECH
Pvu1g2341 1 48795703 48801991 Pvu7g2057 7 43954342 43959212 PCT