Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu7g2055 | ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAACACAGAGATGCGTTGAAGAGTGTTCGCATTCCCTCCTTCTCTTCGCCGCAGTCCACCTCCTCCCGCGGCGGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCCAATCGCTCTTACGCTCCGCTTAGTACCGATGATCCTGGCAATTCGAGTAAGGGTCCAAATGCAATCAATGTGGGACTACCTCCTGCATGGGTGGATTTGTCGGAAGAAATATCAGCAAATGTGCAACGTGCACGAACAAAAATGGCAGAGTTGGCCAAGGCTCACGCAAAGGCTTTGATGCCGTCATTTGGAGATGGGAAAGAAGATCAACATACTATCGAGACTCTAACACACGAGATAACTGACTTAATAAAGAGGTCGGAGAAGAGACTTCGGAGACTTTCTGCTTCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAACGTGCAGCGATCTATTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTACGCAAGAAACAATCAACTTATTTAAAGCGCCTCAGACTACAAAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAACTTAAATGGAGGTAAATCAAGATACGAAGATGATGATTTGGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTAAAAAAAAGTGAAGCATTCACAGTGGAAAGAGAGAAAGAGATCCAGCATGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTGTCAGTGCTAGTCATAGACCAGGGAACTATCGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGCGAACTCAGAAAAAGGGGGGTATGGTAATGTGTGCTACTGTGCTTGTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATATTGTGA | 984 | 0.4502 | MATRNRTLLFRKHRDALKSVRIPSFSSPQSTSSRGGGGPVIELVSTSLLNPNRSYAPLSTDDPGNSSKGPNAINVGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHTIETLTHEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRSIATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRYEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQHVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIIL* | 328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu7g2055 | 327 | Coils | Coil | 85 | 105 | - | - | |
Pvu7g2055 | 327 | SMART | tSNARE_6 | 226 | 293 | IPR000727 | - | |
Pvu7g2055 | 327 | PANTHER | TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 322 | - | - | |
Pvu7g2055 | 327 | MobiDBLite | consensus disorder prediction | 53 | 72 | - | - | |
Pvu7g2055 | 327 | Gene3D | - | 78 | 285 | - | - | |
Pvu7g2055 | 327 | Pfam | SNARE domain | 267 | 319 | IPR000727 | - | |
Pvu7g2055 | 327 | SUPERFAMILY | t-snare proteins | 77 | 286 | IPR010989 | GO:0016020|GO:0016192 | |
Pvu7g2055 | 327 | CDD | SNARE_syntaxin16 | 236 | 292 | - | - | |
Pvu7g2055 | 327 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 231 | 293 | IPR000727 | - | |
Pvu7g2055 | 327 | MobiDBLite | consensus disorder prediction | 21 | 41 | - | - | |
Pvu7g2055 | 327 | PANTHER | SYNTAXIN | 1 | 322 | IPR045242 | - | |
Pvu7g2055 | 327 | SMART | SynN_4 | 72 | 187 | IPR006011 | GO:0016020 | |
Pvu7g2055 | 327 | MobiDBLite | consensus disorder prediction | 22 | 36 | - | - | |
Pvu7g2055 | 327 | ProSitePatterns | Syntaxin / epimorphin family signature. | 237 | 276 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu7g2055 | Pvu-Chr7 | 43941486 | 43946392 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu7g2055 | 1 | 327 | SNARE and Associated Proteins | AT5G26980 | 77.676 | 0.0 | 511 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu7g2055 | K08489 | - | gmx:100796741 | 569.696 |