Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2053 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTCGGTCAAAGGAGGGAGGTTCCGATGATTCGGATGAGGACTATGTGGTTTCAGATGACGGCAAAGAGGTATCTGACTATTATTGTTCCTCCTTTGATGGATGTGCATCAGAGGAAAGTTTTGGGAGTATTTTGGGAGAGGAGGAGGAGGAATTTCAAACGGTGAGGAATTTCAATAGATCCAAGGCAAAAAAAGGCACTGCTAGTAGGCAGAAAAATGCCAGTAAAAACTCGCACAAGGGGGGAAGGATTAAATATGTAGAGGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAATACAAAGTGGAGGAGGAGGAGGAAATTCAAGAAGTGAGGAATTTACATAGACCAAAGGCAAAAAATGGTGTATGCAGTAGGAAAAGAAGTGCAGCAAAAATCTGCCCAAAGAGGGGAAGGAAAATACACACAGAACAACTGGAAGAGGAGGAAGAGTTCAAACTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAAAAGGTGAATGAAGGTGGAGATTATGAAGAAGAGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGTGGATGAGGATGATGAGTTTTTGCCTGAGGAAGAAGATTATTCAGATGAGGAAGAGGAAATGAGAGGGAGAAAGAAGAACAATGATAGCATGAAAATGGTCAAGAAGGTTTTTCAGAAGAAAAGGTCCTCTGTAGTTTCGACTAGAGGTAGAAAAAGGCAGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAAGAAAAGAAGAAAGAATGCAAGATTAAGGAAGAAGGTAAGATGTGAAGATGATGATGAAGATGATTTTATAGATAATAGCCCAACCATGAGGACAAGTAAGAGAAAACGGGGCCAGAAGAGAAAAAGGGTGCTTATTTCAGATTCAGAAAACGCATTTTCTGGGTCGTCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAACAACGAAGAGGTTGGTGTCCATGAGGAACAAATTCAGTTGCGGAAACCACCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGATGGGGAAGCAAGTGTGTGGGATTTGTCTATCCGAAGAAGATAAAAGAAGAGTTAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGGTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACCTCAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATGTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTTCTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTCGCTCTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGGTGACAATCCAGAACCTTCCTGTTAGACCACCCCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACATGATTTCGTCACCCCGTGCAGCTTTTAATCCAGGTTTTGGGCATCTTCCATCTTCTAGATTTAGTGGCAGAAGTGTTGAAGGATCTTCTCCTGTATCTGGAGGAGCACCAACGTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAATTACTTTCGATAGATAGGATGACTTCTACCCCTGGCAGAACCACCAATGGTATTTCAGCTACCAGTTCAACTAGTAACTTATATAGCTCTCAAATTGATCAAAGTAGGGGAACCGCCACTCTTCATGCAAGGACGCAGGATGTGGGAACATCATACCACACATTTTTTGATGACAGGTTATGCAACAATACCTCTCCACTAATGCAGAATGGACCATTATGGCCTGGACTTATGGGGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAGCATTGTTCCTGATGATGGCTTATCCTCTGCTGTCAGAGAAGAGACCAACTTTCAGACTGCGAAGGAGCAGTTGCAGTCGATGGTTAAAACACACCTGAAAAGCTTGTCTCAAAATATTGATTTAGGCCACAGTACTTTCAAGGATATTGCTAGGAGTTCTATGCACACCATACTAGCAGCTTGTGATCTTGAGCAGAAGAACACTGAAGTTTGCAATGTGGCTCCTCCGTCTGCCTGTCCGCACATGGAACTAATGGTTGGCGGGCCAACGAGTCTGATTAAAGGTTGCTGCTCATCGTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCGTCCCAGTGGTTACGATTAGGTCTATAG 2616 0.4362 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDDGKEVSDYYCSSFDGCASEESFGSILGEEEEEFQTVRNFNRSKAKKGTASRQKNASKNSHKGGRIKYVEEEEEEEEEEEEEEEEEEYKVEEEEEIQEVRNLHRPKAKNGVCSRKRSAAKICPKRGRKIHTEQLEEEEEFKLEEEEEEEEEEEKEKVNEGGDYEEEEGDRDGEDEDFDYVDEDDEFLPEEEDYSDEEEEMRGRKKNNDSMKMVKKVFQKKRSSVVSTRGRKRQSSRASKKPLRKKRRKNARLRKKVRCEDDDEDDFIDNSPTMRTSKRKRGQKRKRVLISDSENAFSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHLINNEEVGVHEEQIQLRKPPARKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTSGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVMCSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRVTIQNLPVRPPPALHVRESIDLNMISSPRAAFNPGFGHLPSSRFSGRSVEGSSPVSGGAPTLSERRWIHRQIQQLLSIDRMTSTPGRTTNGISATSSTSNLYSSQIDQSRGTATLHARTQDVGTSYHTFFDDRLCNNTSPLMQNGPLWPGLMGTPPVPDCEQVHQFSRSSIVPDDGLSSAVREETNFQTAKEQLQSMVKTHLKSLSQNIDLGHSTFKDIARSSMHTILAACDLEQKNTEVCNVAPPSACPHMELMVGGPTSLIKGCCSSCFDSFVGDVVKRVLDTRVSSQWLRLGL* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2053 871 MobiDBLite consensus disorder prediction 258 287 - -
Pvu7g2053 871 MobiDBLite consensus disorder prediction 376 408 - -
Pvu7g2053 871 ProSiteProfiles Zinc finger PHD-type profile. 509 558 IPR019787 -
Pvu7g2053 871 SUPERFAMILY FYVE/PHD zinc finger 482 557 IPR011011 -
Pvu7g2053 871 Coils Coil 99 136 - -
Pvu7g2053 871 SMART ring_2 419 460 IPR001841 -
Pvu7g2053 871 MobiDBLite consensus disorder prediction 1 36 - -
Pvu7g2053 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 559 IPR013083 -
Pvu7g2053 871 MobiDBLite consensus disorder prediction 657 680 - -
Pvu7g2053 871 MobiDBLite consensus disorder prediction 104 127 - -
Pvu7g2053 871 ProSiteProfiles Zinc finger RING-type profile. 419 461 IPR001841 -
Pvu7g2053 871 PANTHER F18C1.6 PROTEIN 120 860 - -
Pvu7g2053 871 PANTHER F18C1.6 PROTEIN 1 157 - -
Pvu7g2053 871 MobiDBLite consensus disorder prediction 141 158 - -
Pvu7g2053 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 482 IPR013083 -
Pvu7g2053 871 Pfam PHD-finger 511 557 IPR019787 -
Pvu7g2053 871 SUPERFAMILY RING/U-box 418 467 - -
Pvu7g2053 871 CDD RING-HC_Topors 419 461 - -
Pvu7g2053 871 Pfam Ring finger domain 418 461 IPR001841 -
Pvu7g2053 871 MobiDBLite consensus disorder prediction 63 326 - -
Pvu7g2053 871 Coils Coil 341 361 - -
Pvu7g2053 871 ProSitePatterns Zinc finger RING-type signature. 438 447 IPR017907 -
Pvu7g2053 871 SMART PHD_3 511 556 IPR001965 -
Pvu7g2053 871 PANTHER F18C1.6 PROTEIN 1 157 - -
Pvu7g2053 871 PANTHER F18C1.6 PROTEIN 120 860 - -
Pvu7g2053 871 Coils Coil 164 196 - -
Pvu7g2053 871 MobiDBLite consensus disorder prediction 231 249 - -
Pvu7g2053 871 MobiDBLite consensus disorder prediction 171 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2053 Pvu-Chr7 43931397 43935502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2053 419 464 C3H Transcription Factor Family AT2G39100 43.478 4.00e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu7g2053 PHD 6.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2053 - - gmx:100797448 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2053 7 43931397 43935502 Pvu7g2053 7 43931397 43935502 ECH