Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2021 ATGGATCACGCGCGATCGACCAACGGCGAGGACAATGCGGCGGGAATTCCGGACGACTTGCGGTGCAAGAGGTCAGACGGAAAGCAGTGGCGTTGCACGGCCATGTCGATGCCGGACAAGACGGTGTGCGAGAAGCACTACATCCAGGCGAAGAAGCGCGCCGCGAATTCCGCAATGAGGGCCAACCTCAAGAAAGCCAAGAGGAAGTCGCAGTCGCTGAACGAGTCTGATGTTTATTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTCTCCGCTATAAGCCTTTCGCAGAAGAAGCTCTCGAAGAACCAGTTTCGTTACACGCCCGAGCGTGACGCGCGAAGAGCCTCCTCTGCGAGACATGCTCATGACGAGGTGGATGTGGATGCGGATGCGGATGCGGATGTGGATGTGGATGCGGATGTGGATGTGGATGCGGATGTGGATGTGGATGTGGATGCGGATGCGGATGCGGATGCGGATGCTGATGTGGCGCTCTATGAAGAAGACAATTGGGTCTCCTATGATTCCCCGCCGGACTCCTCGCGCAAAAGATCGCGAAGGAGCTTGGATGCTAATGCCACTACTGAATATTCCGACAGAACCTCTGGTTCTTCTGAAGACACCGGCGGGCAGACTTGTCATCAGTGCCGGAGGAATGACCGAGATAGAGTTACTTGGTGCTTAAGATGTGACAGGAGGGGATACTGTGATAGCTGTATATCAGCATGGTACTCGGACATTTCGTTGGATGAAATTCAGAGGATATGTCCTGCTTGCCGTGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCTATTAAGGTTCGGATACGCGAGATACCTGTTCTGGATAAGTTACAGTATCTTCATGTCTTGCTATCGTCGGTGCTTCCTGTGGTAAAGCAGATCCACCGTGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGCTGCGTGGTGCTGAAATAGATCTTCCGAGAATAAAATTCAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGACGCTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCTGATCGCAATGAAGAACCCCAGACAGAGCTAGCTAAAACTTATGATCAAAATATATTAAGTAAATTTCCTCAATGGAGATCCAATGACAATGAAAGTATTCCATGTCCCCCTAAGGAGTATGGGGGCTGTGGCCATTCTTCATTAAACTTAAGCCGAATTTTCAAGATGAATTGGGTAGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAACGACTATGGTACTACTCCAGAAATCGGGCTGAGTGATCTCAGACTCTGCCAGTGTTCTCATAGAGAAGCCAGTGATGATAATTATCTCTATTGTCCTGCATCTGAAGATATCAAAACTGATGGGATTGGAAATTTTAGAAAGCACTGGAAAACTGGTGAGCCAATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGGGGGATTCTAGAGACAACAGATGAGAAAGCGAAAGACGAGAACAGGATGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATTGAGCTGGCTGAGTTCATGAAAGGATACCTCGAAGGGCGCATTCATGAAAATGGTTGGCCTCAGTTATTGAAATTGAAGGATTGGCCTTCACCTAGCGCATCTGAAGAATTTCTATTGTACCAAAGACCTGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATGGCTTATGGAATTAGTGATGAACTTGGAAGAGGTGATTCAGTGACAAATCTCCACTTTAATATCCGTGACATGGTTTACCTTTTGGTTCATACAAATGAAGTAAAGTTGAAGGACTGGCAGAGAACTAAAATTGAAATTATGCAAAAGGCTAAAACTAATGAGGAATCTGAGGCGAAAGAGTCACATGGGGATCCTCAAATATTTTCAAGTGGGAGTTCACTTGATTCATCACTTGGTACAAAAAGTAGTGGACTGGATATGGATTCAAACCAGAATAAGTCAATTATGGATGAAGAATTTGAAATTTATTCTGGTGCTGAAGGTAATATGGTCAATTTTAAAGTCCCATCTACACAAAATGGAGATGTCTCCGAGGAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATACATTGGAAGGAATTGGGGAAGTCAGGTGATGCGGGAAATGAATTTGTTGCATGGCCTCTTTATGGTGGAGCTATTTTTCTCGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCCGGTTGCCCTTTCCAAGCAAGGAATGTTCAATCGAATGTTCAGCTGGGCCTTGATTTCTTATCCCCGGAAAGCCTGGGCGATGCTGTAAGATTGACAGAGGAAGTTCGCTGTCTACCTAATGAACATGAATCCAAAATTCAAGTATTGGAGGTGGGGAAGATATCTCTATATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAGCTTGTACTTGACCAAAAACTTGGCGCCCAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2868 0.4439 MDHARSTNGEDNAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLNESDVYLESKSDDFDVPLSAISLSQKKLSKNQFRYTPERDARRASSARHAHDEVDVDADADADVDVDADVDVDADVDVDVDADADADADADVALYEEDNWVSYDSPPDSSRKRSRRSLDANATTEYSDRTSGSSEDTGGQTCHQCRRNDRDRVTWCLRCDRRGYCDSCISAWYSDISLDEIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRIKFNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADRNEEPQTELAKTYDQNILSKFPQWRSNDNESIPCPPKEYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNDYGTTPEIGLSDLRLCQCSHREASDDNYLYCPASEDIKTDGIGNFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGILETTDEKAKDENRMVKAIDCLDGSEIDIELAEFMKGYLEGRIHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYMAYGISDELGRGDSVTNLHFNIRDMVYLLVHTNEVKLKDWQRTKIEIMQKAKTNEESEAKESHGDPQIFSSGSSLDSSLGTKSSGLDMDSNQNKSIMDEEFEIYSGAEGNMVNFKVPSTQNGDVSEETHPGVLWDVFRRQDVPILTKYLKIHWKELGKSGDAGNEFVAWPLYGGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLTEEVRCLPNEHESKIQVLEVGKISLYAASSAIKEVQKLVLDQKLGAQIGYGDPNLTAMVSENYEKMVKRRQITCA* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2021 955 MobiDBLite consensus disorder prediction 193 214 - -
Pvu7g2021 955 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Pvu7g2021 955 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 7 944 IPR045109 GO:0032454|GO:0033169
Pvu7g2021 955 MobiDBLite consensus disorder prediction 1 20 - -
Pvu7g2021 955 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 210 275 IPR018866 -
Pvu7g2021 955 Pfam WRC 17 57 IPR014977 -
Pvu7g2021 955 MobiDBLite consensus disorder prediction 105 129 - -
Pvu7g2021 955 Coils Coil 56 76 - -
Pvu7g2021 955 Gene3D Cupin 477 894 - -
Pvu7g2021 955 SUPERFAMILY Clavaminate synthase-like 498 896 - -
Pvu7g2021 955 SMART cupin_9 596 885 IPR003347 -
Pvu7g2021 955 MobiDBLite consensus disorder prediction 691 731 - -
Pvu7g2021 955 PANTHER JMJC DOMAIN PROTEIN JMJ24 7 944 - -
Pvu7g2021 955 MobiDBLite consensus disorder prediction 105 137 - -
Pvu7g2021 955 ProSiteProfiles Zinc finger RING-type profile. 215 262 IPR001841 -
Pvu7g2021 955 MobiDBLite consensus disorder prediction 171 217 - -
Pvu7g2021 955 MobiDBLite consensus disorder prediction 704 731 - -
Pvu7g2021 955 Pfam JmjC domain, hydroxylase 821 864 IPR003347 -
Pvu7g2021 955 ProSiteProfiles JmjC domain profile. 589 885 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2021 Pvu-Chr7 43604636 43611704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2021 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.15e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu7g2021 JmjC 2e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2021 K15601 - gmx:100801287 1640.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2021 7 43604636 43611704 Pvu7g2021 7 43604636 43611704 ECH