Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2019 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCAACAGAGAATACGAGAGAAGATGCAGCAGTTAAACAGAAATCTGAGATGCTTGGTCAGTTCCACAGTCCACATTCTCTTACTTCAACTACAACAACAAATAATAGCAATGGTTCCAATACAAATTCACAACCACCTGCCCCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCTTTATCACCCAACACACTAATGGCCACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAGCAGAGAACAAGCACAGAGGTTCGAAAGAGGGTTTATGTTTGTCCAGAACCCTCGTGTGTCCACCACAACCCTGCAAGAGCACTTGGTGACCTCACCGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATTTTTTCAAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTGGCTGAAGAGAACAACAAAGCCAACGAAGGACAATTGCCAAAGATAGGTCCAAACTTGCAATGCCAACAGATTCCAAACCTTGTTTCCTCATTACCAATCAACACCAACATTGTTCCCAACCCACAAATCGGTGGCACATCGGAGTTCAACCATGCTGAACACAAGCACCCACTATCACTCCCGCACGAGCTAATGCCAATGCCTGCACCAAAACCCTTCAACAACACCACCACCATGGCAGGAACAGTGTTCTCGAGAAGCCTCTCATCAACCTCTCCACCGTCTCTCCAACTAAGTTCAAATATATTCGAGGAAAACGGGCTCCACCTGGCTGCAGGGTCGCCACACATGTCAGCCACGGCCCTGCTGCAAAAAGCTGCGCAAATGGGAGCAACAGTGACGGACAAAACTTTTAGCACAAACATGGCACCGCCATCGTTTGGGGTGCTGCAACAGCAGCCGAATGGGCAATCCTTCATGAACCAGTACATGCAGAGTGGCCAACATGATGCTAACGTTAACATCTCGGCTCAGTATAATGGTTTCGGCGCAAATGGGATAAGTGGAGGAAGCGTTGGAATGAACGGTGTGGACATGTTCAACGCTATCTTGGACCAAAGCAAGGCTTTATCAAAGATCATAGAGCAAAGCAATAGAAGCAGTAGTGGAGGAGCAACAAATGGAGGTTCAAGTGCTATTAACGTTGGTGGAAGTAAAGGAAGTGGGGATGTAATGACTTTGGACTTTTTGGGAATAGGTGGTGGTGGTGCCGGTGCCGGTGGTGCACATGGAAACTTCTATGGTGGTTCACAACAAGCAGAAAATGGTGCACCAGATGAGGTTTGGAGAAACTGGTCAAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1560 0.4641 MSNITSCDSGSFSTENTREDAAVKQKSEMLGQFHSPHSLTSTTTTNNSNGSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSLPINTNIVPNPQIGGTSEFNHAEHKHPLSLPHELMPMPAPKPFNNTTTMAGTVFSRSLSSTSPPSLQLSSNIFEENGLHLAAGSPHMSATALLQKAAQMGATVTDKTFSTNMAPPSFGVLQQQPNGQSFMNQYMQSGQHDANVNISAQYNGFGANGISGGSVGMNGVDMFNAILDQSKALSKIIEQSNRSSSGGATNGGSSAINVGGSKGSGDVMTLDFLGIGGGGAGAGGAHGNFYGGSQQAENGAPDEVWRNWSSKNAGFESFSATSSI* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2019 519 Gene3D Classic Zinc Finger 70 137 - -
Pvu7g2019 519 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Pvu7g2019 519 SMART c2h2final6 91 113 IPR013087 -
Pvu7g2019 519 SMART c2h2final6 132 162 IPR013087 -
Pvu7g2019 519 SMART c2h2final6 167 187 IPR013087 -
Pvu7g2019 519 MobiDBLite consensus disorder prediction 31 60 - -
Pvu7g2019 519 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 474 - -
Pvu7g2019 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Pvu7g2019 519 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Pvu7g2019 519 Gene3D Classic Zinc Finger 146 225 - -
Pvu7g2019 519 MobiDBLite consensus disorder prediction 1 75 - -
Pvu7g2019 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 474 - -
Pvu7g2019 519 MobiDBLite consensus disorder prediction 1 18 - -
Pvu7g2019 519 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2019 Pvu-Chr7 43594990 43598796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2019 48 349 IDZ Gene Family AT3G50700 57.492 1.37e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2019 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2019 - - gmx:100785295 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0950 6 20922488 20926014 Pvu7g2019 7 43594990 43598796 ECH
Pvu7g2019 7 43594990 43598796 Pvu7g2019 7 43594990 43598796 ECH
Pvu1g1606 1 41211931 41216156 Pvu7g2019 7 43594990 43598796 PCT
Pvu6g0950 6 20922488 20926014 Pvu7g2019 7 43594990 43598796 PCT