Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2017 ATGGATCAGGAGGAGCAGGATAAAGCGTTGCCCATTGCAAATGTGGGTAGAATCATGAAGCAAATTCTTCCTCCTAGTGCAAAGATCTCCAAGGAAGGGAAACAACTAATGCAAGAGTGTGTGACAGAGTTCATAAGTTTTGTGACTGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGACCATAGCAAGGTACTTACATAAATACAGGCAAGCTGAAAGGGAGAAAATGAATCACAACAAAAAATATGAAGGATCAGCAACACAAACTCTCAACCAACCTCAACTTATCCTTCCTCCTCCACCACCATCACTCTCTAGGGTTACTGGCAAAGTTCAAAACCCTCCCACTACAGATCAATCTGGATGA 438 0.4361 MDQEEQDKALPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAETIARYLHKYRQAEREKMNHNKKYEGSATQTLNQPQLILPPPPPSLSRVTGKVQNPPTTDQSG* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2017 145 MobiDBLite consensus disorder prediction 99 145 - -
Pvu7g2017 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 112 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu7g2017 145 SUPERFAMILY Histone-fold 6 111 IPR009072 GO:0046982
Pvu7g2017 145 Coils Coil 78 105 - -
Pvu7g2017 145 MobiDBLite consensus disorder prediction 130 145 - -
Pvu7g2017 145 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Pvu7g2017 145 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Pvu7g2017 145 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Pvu7g2017 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
Pvu7g2017 145 Gene3D Histone, subunit A 1 119 IPR009072 GO:0046982
Pvu7g2017 145 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu7g2017 145 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2017 Pvu-Chr7 43541078 43541515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2017 5 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 74.000 5.80e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu7g2017 CBFD_NFYB_HMF 3.6e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2017 K08065 - gmx:100815151 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2017 7 43541078 43541515 Pvu7g2017 7 43541078 43541515 ECH