Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2016 ATGGCGGAAACCAAGTTGAAAGAAAGCATTGGCGAAGAAGAAGAGAAAAAAGAAGCAGAGGACCAAAGCTTCGAAGAGCTCGGCGTAGACGCTCGTCTCCTTCGCGCCTTACACAAGAAAGGGATTGCGAAACCCACTCCAATTCAGGGCGTCGCCATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCTGGAAAGACCTTAGCATATCTTCTCCCGTTGCTTCAGAAACTTTTTACCGTTAGGGCTGATCGGAAGAAGTTGGCGCCCAATGCTTTTGTTCTTGTCCCTACTCGCGAACTCAGTCAACAGGTGTATGCGGAAGTGTTGTCGCTGGTTGAGCTATGCAGAGTTAAACTAAAAGTTGTGCAGCTGAATAGCAACATGCTTGCCAATGACTTGCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTACTTGCGTAGCGAAGTGTTTGTCCGGTGGCATACTTAAGGCCGAATCCATTAGTGAATCGCTTGAAACTCTTGTTCTTGATGAGGCAGATCTACTACTGTCATATGGGTATGAAAAGGATATAAAAGCTTTTACACCTCATGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTTTCACTCACTTTCACACTATCAATAGCTTTACATAA 687 0.4614 MAETKLKESIGEEEEKKEAEDQSFEELGVDARLLRALHKKGIAKPTPIQGVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTVRADRKKLAPNAFVLVPTRELSQQVYAEVLSLVELCRVKLKVVQLNSNMLANDLRAALAGPPDILISTPTCVAKCLSGGILKAESISESLETLVLDEADLLLSYGYEKDIKAFTPHVPRSCQCLLMSATSSFTHFHTINSFT* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2016 228 Pfam DEAD/DEAH box helicase 46 218 IPR011545 GO:0003676|GO:0005524
Pvu7g2016 228 Gene3D - 1 225 IPR027417 -
Pvu7g2016 228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 228 IPR014001 -
Pvu7g2016 228 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Pvu7g2016 228 PANTHER RNA HELICASE 7 216 - -
Pvu7g2016 228 Coils Coil 2 22 - -
Pvu7g2016 228 MobiDBLite consensus disorder prediction 1 23 - -
Pvu7g2016 228 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 7 216 - -
Pvu7g2016 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 217 IPR027417 -
Pvu7g2016 228 SMART ultradead3 41 227 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2016 Pvu-Chr7 43527919 43529752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2016 3 215 Eukaryotic Initiation Factors Gene Family AT3G13920 31.944 8.34e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2016 K14810 - pvu:PHAVU_007G195800g 431.795