Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2013 ATGGAAGGAAACTATCTGAACAGAAATAGTACTAGTACTCCACAGAGAGAAGATAGCTTTGGCTTTGAGGAGCATACATGGGGAACTTCATGGCCTGCTAGAAACTATGCCTGCAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTAGGTGGACACATGAATGTTCACAGAAGGGATAGGGCTAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAGCCTAACCCTAGCACTAAGCCTAATAGCCCAACTCTTCTGCCAACATCTTCATCACCATCTCTTTTATCTGATGACCCTTTGAACTGTGCACATCCTTCTCCACGTTGCAGTCCTTGTCTCACTTTGTCTTCTTCACCCTTCCCAGCTTCTTCCAGTGGAGACAAGAAACCAAGACTCACACCTTCTCATTCTCAGTTTCCTCTTTTGAGTCCTCAAAGCTGCGAAATTAAGATGATGATGAGTAACAACACAAGGAGTGGTTTCAGTGCTGAGGAGGAAATGAAGGGCTGTGTAGAGGAGGAGGATCACAAGGGTTTCAAGGACAATGAGAAAAACATCACGTTGGAATTAGGAATAGGGTTGCTTAAACACGAAGAGGAGAAGTTAGATTTGGAGCTTCGACTCGGGCATTTCTAG 651 0.4439 MEGNYLNRNSTSTPQREDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNSPTLLPTSSSPSLLSDDPLNCAHPSPRCSPCLTLSSSPFPASSSGDKKPRLTPSHSQFPLLSPQSCEIKMMMSNNTRSGFSAEEEMKGCVEEEDHKGFKDNEKNITLELGIGLLKHEEEKLDLELRLGHF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2013 216 Gene3D Classic Zinc Finger 18 80 - -
Pvu7g2013 216 SMART c2h2final6 36 58 IPR013087 -
Pvu7g2013 216 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Pvu7g2013 216 PANTHER OS07G0101800 PROTEIN 17 215 - -
Pvu7g2013 216 Pfam C2H2-type zinc finger 36 60 - -
Pvu7g2013 216 MobiDBLite consensus disorder prediction 125 148 - -
Pvu7g2013 216 MobiDBLite consensus disorder prediction 70 103 - -
Pvu7g2013 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Pvu7g2013 216 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 17 215 - -
Pvu7g2013 216 MobiDBLite consensus disorder prediction 1 22 - -
Pvu7g2013 216 MobiDBLite consensus disorder prediction 87 102 - -
Pvu7g2013 216 MobiDBLite consensus disorder prediction 1 17 - -
Pvu7g2013 216 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2013 Pvu-Chr7 43430129 43431188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2013 24 214 C2H2 Transcription Factor Family AT3G23130 40.488 7.97e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2013 zf-C2H2_6 5.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2013 - - gmx:102660985 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2013 7 43430129 43431188 Pvu7g2013 7 43430129 43431188 ECH
Pvu1g1646 1 41773583 41774791 Pvu7g2013 7 43430129 43431188 PCT