Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2012 ATGGAATTCAGCTGCCAAGAAGATTATTCCAAAAGCTCCAGCGAAGAAATTGATCGATCATCTGAACAGAATGACGAGATGGGCACTGGCAGATCCTACGAGTGTGTCTTTTGCAAGAGAGGCTTCACCACTGCACAGGCTTTGGGTGGACACATGAACATACACAGAAAAGATAGGGCCAACAAGGCCAAACCCAATTTTCCTCCTTCCACTTCAACCAAGGTTGATGACAGTAATAGCTATGCAGATCTCGGCTTATACTCACCATCATCAAATACAACCTATCTTGCAAGAGGGAGTTACTACTCCACTCTTCCTGATCCAGAGGTAGACATTAATTACAACTACTACCATCAATTATATTTTCCCTCACACGCTTGTGCTGCCAAATCACCTTCACATGTACAATACAGTGAGGTTTTGTGTGTAGAGAACCAAAGGGATCCTCAACTTCTGTTTGGACAAGATTGGAGACAAAGGGGTTTGAGTCTCTACACCAACCCACTATGTGCACGTCAAAATAAAGACAAGACACAAAACAACACTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGAAAGATGGGTTAAGTTGGAAGCAGAAAGAAGCAGAAGAAGCAAGATTTCTATAGCATGGAAGCTAGGTTCTTGA 654 0.4297 MEFSCQEDYSKSSSEEIDRSSEQNDEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANKAKPNFPPSTSTKVDDSNSYADLGLYSPSSNTTYLARGSYYSTLPDPEVDINYNYYHQLYFPSHACAAKSPSHVQYSEVLCVENQRDPQLLFGQDWRQRGLSLYTNPLCARQNKDKTQNNTEEDDLDLELRLERWVKLEAERSRRSKISIAWKLGS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2012 217 Pfam C2H2-type zinc finger 33 57 - -
Pvu7g2012 217 PANTHER OS07G0101800 PROTEIN 1 193 - -
Pvu7g2012 217 MobiDBLite consensus disorder prediction 57 81 - -
Pvu7g2012 217 Gene3D Classic Zinc Finger 7 83 - -
Pvu7g2012 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Pvu7g2012 217 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Pvu7g2012 217 MobiDBLite consensus disorder prediction 65 81 - -
Pvu7g2012 217 MobiDBLite consensus disorder prediction 9 25 - -
Pvu7g2012 217 MobiDBLite consensus disorder prediction 1 28 - -
Pvu7g2012 217 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 1 193 - -
Pvu7g2012 217 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2012 Pvu-Chr7 43407796 43408593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2012 33 65 C2H2 Transcription Factor Family AT5G43540 84.848 2.40e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g2012 zf-C2H2_6 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2012 - - gmx:102670484 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2012 7 43407796 43408593 Pvu7g2012 7 43407796 43408593 ECH
Pvu1g1647 1 41789351 41790573 Pvu7g2012 7 43407796 43408593 PCT