Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2007 ATGACTGGTTCAGGATCTCCCTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGCGTGAGAGGTTGTGTTTTTGCACCTTATTTTTGCCATGAGCAAGGTGCTACTCATTTTGCAGCCATTCACAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCCAGACTTCAGGATCCAATTTATGGCTGTGTCTCCCATATCTTTGCACTCCAACAACAGGTGGTTAATTTACAAGCACAGCTGGCTTATCTAAAGGAACAAGCTGCCCAGAGTTGTCTCAATGGCTCTGTCAATGAAAACCCTAGTGAAAAATTATTCGAAAAATCTTCAGCTGCTTTACCCCAAGATCTTCAAAGTTGGTTTCAGGTGGAAAACTCCAATCTGGGGCCAGAGTTTCTTCCTAACATGTGTACTAATTTATCAACCCAAAAACATTATGGGAACAATGCTCTCATTGAAGATCTAAACCCTACCTGGATTAATTATGAAAATTCTGGTGCCATGGAAGAAAACAGCTCCTTTTCTAGCTTTGACGAGAGTTCTAATAGCTACTCCATGTCTTATGACATGCACACAAACAGGAGGACGTGGGGTTTTCATGAAGTGGAGGATCTACGTTCAGTGGCTTTTGGGTACAGTACTCGATCACATTCATGA 717 0.4296 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGSVNENPSEKLFEKSSAALPQDLQSWFQVENSNLGPEFLPNMCTNLSTQKHYGNNALIEDLNPTWINYENSGAMEENSSFSSFDESSNSYSMSYDMHTNRRTWGFHEVEDLRSVAFGYSTRSHS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2007 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 235 - -
Pvu7g2007 238 Coils Coil 87 107 - -
Pvu7g2007 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 235 - -
Pvu7g2007 238 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Pvu7g2007 238 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2007 Pvu-Chr7 43334104 43335221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2007 7 232 AS2 family AT3G58190 51.304 5.49e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu7g2007 LOB 5.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2007 K13945 - gmx:100805623 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2007 7 43334104 43335221 Pvu7g2007 7 43334104 43335221 ECH
Pvu1g1653 1 41858110 41859150 Pvu7g2007 7 43334104 43335221 PCT