Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1998 ATGGCACTGAACAAGAACCACTCCTACAACAACAAGCTTGGATATGAAGCTCTCCCACCCATCAAAGCCCAGGCTGAAACACTCCAAGACCCCCCACAACCTGCTTCATCAGACTATGCTTTTCCCATATTTGTTATTGTTGTGCTCAGTGTCTTGGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACAAGATACTGCTCAAACTGGCGTCAAGTTAACCCAATGAGATGGATTTCCCTCCTGCGAATGCGACACAATGAGGATCCCTTCATAGCATTTTCTCCTGCTATGTGGAACCGAGGGCTTGATGAATCTGTCATCAGAGAAATCCCAACGTTTCAGTTCATAAAAGGAGAAGGTGAGGACCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAACTGCAACCATGCCTTTCATTTGGACTGCATTGATATGTGGCTTCAGGCCAATTCCAATTGCCCGCTTTGCAGATCTAGCATTTCAGGCAACTCACACTGTCCATTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTGGGGGGAGAGCCTGGAGCAGTGCTTCCACAGGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATCGAAACCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGTGATGAGTGTATTGATATCAGAAAAAAAGATGACCAGTTTTTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATAATACAACAAAACAGGCATCAGAATGAGGCTAGTGCAAGTGAGTACTGTAACAGCAAATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAAGACAGTTCTTCCTTTGGAAAATGATGTTTAG 1035 0.4377 MALNKNHSYNNKLGYEALPPIKAQAETLQDPPQPASSDYAFPIFVIVVLSVLATVLLLLSYFTFLTRYCSNWRQVNPMRWISLLRMRHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKGEGEDQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDMWLQANSNCPLCRSSISGNSHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQQERNDSRGSLAHRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFFIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEYCNSKCRRAFFPFCYGKGSKKTVLPLENDV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1998 344 SUPERFAMILY RING/U-box 130 177 - -
Pvu7g1998 344 Pfam Ring finger domain 131 173 IPR001841 -
Pvu7g1998 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 179 IPR013083 -
Pvu7g1998 344 PANTHER RING-H2 FINGER PROTEIN ATL16 5 341 IPR044600 GO:0016567|GO:0016740
Pvu7g1998 344 SMART ring_2 131 172 IPR001841 -
Pvu7g1998 344 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 341 - -
Pvu7g1998 344 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Pvu7g1998 344 CDD RING-H2_PA-TM-RING 131 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1998 Pvu-Chr7 43248733 43250390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1998 32 307 C3H Transcription Factor Family AT1G04360 44.194 8.41e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1998 K19041 - gmx:100809883 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1998 7 43248733 43250390 Pvu7g1998 7 43248733 43250390 ECH
Pvu7g1998 7 43248733 43250390 Pvu1g1659 1 41960337 41961290 PCT