Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1995 ATGACTTCTCCTTTCTTTCAGAGCCCATATTGGGACATGATCATGGAGATGCAAGAGCCTTCAGAAATTTTGTTCCAATCATTGTCAACCAATGATGTTCTTGACCCTCTACACGATTCTCTTTCCTTCGACATGGTTGACTTCTCCACAGCACCAACAGAAGGAAACCACAACGAGGCAAAGCAATTGGTGGTGGAGTCTCAAGAGCAGAATAGGGAAAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGGAAATTTGCTGCAGAAATCCGAGATACAACCAGAAGGGGCACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCTGCATTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCTGTCAAAAGGGTTAAAGAATCTTTGCAAGAGATACAATATAGCTGCTTCAGTGGGTGCTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCAAGCAAAAATACTTATCAAAAGCTAAAAAGTGTAAAGGGAAAGAGAAATCAAATTCAAATGTGGTGGTGTTAGAAGATTTGGGAGTTGACTACCTAGAGCAACTTCTAACCATATCTGATCAAAGTGCAAGCCCTAGCCACTTCAACTAA 639 0.4335 MTSPFFQSPYWDMIMEMQEPSEILFQSLSTNDVLDPLHDSLSFDMVDFSTAPTEGNHNEAKQLVVESQEQNRERSYIGVRKRPWGKFAAEIRDTTRRGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYSCFSGCSPALALKERHCKQKYLSKAKKCKGKEKSNSNVVVLEDLGVDYLEQLLTISDQSASPSHFN* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1995 212 PANTHER DNA-BINDING DOMAIN 50 207 IPR044808 GO:0003700|GO:0009873
Pvu7g1995 212 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Pvu7g1995 212 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Pvu7g1995 212 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Pvu7g1995 212 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Pvu7g1995 212 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Pvu7g1995 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 50 207 - -
Pvu7g1995 212 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Pvu7g1995 212 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Pvu7g1995 212 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1995 Pvu-Chr7 43227132 43227770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1995 73 207 AP2-EREBP Transcription Factor Family AT3G23240 59.286 1.17e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g1995 AP2 3.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1995 7 43227132 43227770 Pvu7g1995 7 43227132 43227770 ECH
Pvu6g1113 6 22259920 22260531 Pvu7g1995 7 43227132 43227770 PCT
Pvu7g1995 7 43227132 43227770 Pvu1g1661 1 41973984 41974619 PCT