Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1994 ATGACTTCCCCTTTCATCCAGAACCAAGACTGGGACATCTCGCATGAGCCCCCAGAAATTTTGTTCAATTCTTTGCCAAGAAATGCTGTTCTTGACCCTATTCACGATTCTCTTTCCTTCGATATGGTTGATTTCTCCACGGCACAAGCACAAGGAAATCACAACCAAATGGTGGTGAAGACTGAAGAATTGGAGAATAAGGAGAGGTCGTACAAAGGTGTGAGGAAAAGGCCTTGGGGAAAATATGCAGCAGAGATCAGAGACACAACCAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCTGCGTTAGCTTATGACCAAGCTGCATTCTCCATGAGAGGCCATAATGCTGTGCTCAATTTTCCAGTGAAAAGGGTGAAAGAGTCTTTGCAGGAGATCCAATATAGCTGCTTCAGTGGTTCTTCTCCCGCACTTGCACTCAAGGAGAGGCACTGCATCCGAAGAAAGTTGTCATCAAAAGCTAAAAAGTTTAAAGGGAAAGACACATCAGAGGATCCAACACAAAGTGTGGTGGTGTTAGAGGATTTGGGAGTTGACTATTTAGAACATCTTCTAAGCATATCCGATCAAAGTCAAAGCCCTAGCTGCTTCGACTAA 636 0.4481 MTSPFIQNQDWDISHEPPEILFNSLPRNAVLDPIHDSLSFDMVDFSTAQAQGNHNQMVVKTEELENKERSYKGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYSCFSGSSPALALKERHCIRRKLSSKAKKFKGKDTSEDPTQSVVVLEDLGVDYLEHLLSISDQSQSPSCFD* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1994 211 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 36 200 - -
Pvu7g1994 211 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Pvu7g1994 211 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Pvu7g1994 211 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Pvu7g1994 211 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Pvu7g1994 211 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Pvu7g1994 211 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Pvu7g1994 211 PANTHER DNA-BINDING DOMAIN 36 200 IPR044808 GO:0003700|GO:0009873
Pvu7g1994 211 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Pvu7g1994 211 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1994 Pvu-Chr7 43194246 43194881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1994 40 204 AP2-EREBP Transcription Factor Family AT3G23240 52.096 1.34e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g1994 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1994 K14516 - gmx:100812017 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1994 7 43194246 43194881 Pvu6g1113 6 22259920 22260531 ECH
Pvu7g1994 7 43194246 43194881 Pvu7g1310 7 27274067 27275018 ECH
Pvu7g1994 7 43194246 43194881 Pvu7g1994 7 43194246 43194881 ECH
Pvu1g1662 1 41988449 41989014 Pvu7g1994 7 43194246 43194881 PCT