Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1989 ATGGATTTTGATTCATCTTTCTTCCAGTACCAAAGCCTTAACACTCCCTTTCTAAATTCTTCTTTGTGTGCAGAACCATTCCATTGGGAGGACTTTTTTCTCTTCAATGAAGAAAACACCACCACCCTTGATGATAATCCCTTCACCTTCAGTGACCACTCACAAATCAAGGAATCATCCTCGGATTCCAACTCTTCAGGCTCTTTGGTCAGCAGTGAGTCACAGCTGGAAGTGTCCTCCAATTTAACTCATGCAAGGCAAGGCCAAGTGCTCCAAGAAGCAGATGCATCAGCCCCTCCAAAGGAGAGCATCAAAGAGAAGAGACCCTTTAGGGGAGTGAGGAGAAGGCCATGGGGGAAATTTGCTGCTGAGATAAGAGACTCCACAAGAAATGGGGTTAGAGTGTGGATTGGAACATTTGACACAGCAGAGGCTGCTGCACTGGCCTATGACCAAGCAGCTTTGTCAACAAGAGGTTCCATGGCAGTGCTGAACTTCCCAGAAGAAGTGGTGAGGGAATCACTCAAAGACATGGCCAACAAGCCATGGGAAGATGGTTCCTCACCAGTGTTGGCACTCAAGAGGAAACACACCATGAGAAGGAAGTCCAAAGCCACAAACAAAAAGGCCAAAAGGGAGCACCAGTTGGAGAATGTGCTTTCACAAAATGTGTTGGTGTTGGAGGATTTGGGCTCTGACTACTTGGAACAGCTTCTCAGCTTAACTTCTTCTTCTTCTTCTTCTTCTTCTGATCATTTGCTTTGCTAG 768 0.4622 MDFDSSFFQYQSLNTPFLNSSLCAEPFHWEDFFLFNEENTTTLDDNPFTFSDHSQIKESSSDSNSSGSLVSSESQLEVSSNLTHARQGQVLQEADASAPPKESIKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMANKPWEDGSSPVLALKRKHTMRRKSKATNKKAKREHQLENVLSQNVLVLEDLGSDYLEQLLSLTSSSSSSSSDHLLC* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1989 255 CDD AP2 110 168 IPR001471 GO:0003700|GO:0006355
Pvu7g1989 255 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Pvu7g1989 255 MobiDBLite consensus disorder prediction 87 107 - -
Pvu7g1989 255 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700|GO:0006355
Pvu7g1989 255 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700|GO:0006355
Pvu7g1989 255 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Pvu7g1989 255 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 243 - -
Pvu7g1989 255 PANTHER DNA-BINDING DOMAIN 4 243 IPR044808 GO:0003700|GO:0009873
Pvu7g1989 255 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Pvu7g1989 255 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Pvu7g1989 255 SMART rav1_2 109 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1989 Pvu-Chr7 43116184 43117296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1989 89 247 AP2-EREBP Transcription Factor Family AT3G23240 55.828 3.66e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu7g1989 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1989 K14516 - gmx:100784784 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1989 7 43116184 43117296 Pvu7g1989 7 43116184 43117296 ECH
Pvu1g1664 1 42037682 42038650 Pvu7g1989 7 43116184 43117296 PCT