Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1984 ATGGGAAGAAGTCCTTGCAGTGAGGGATTGGGGTTGAACAAAGGGCTATGGACTCGAGAGGAAGATCTCATTCTCATCAATCATATCAACAAACATGGTCACAAAAATTGGCGTGCCCTACCCACACAAGCTGGGCTTTTGAGGTGTGGAAAGAGTTGCAGACTCCGGTGGATAAACTATCTAAGGCCAGATATTAAACGGGGCAACTTTACAAGAGAAGAAGAAGACATGATAATCCAGTTGCATGAAAACCTGGGGAACAGATGGTCAGCCATAGCAGCAAAGTTAGCAGGTCGCACAGACAACGAAATAAAGAACGTGTGGAACACCCACTTGAAGAAGAGGTCCCAACAAGACAAAGACACAAAACGAAACCACTCCTTGGTCTGCACACAAATTTCCAAACAACAACCCGTGAAGGCTCTTCCGACAGATCATGTCATCCAAACCACAGAAAAGAAGGCACTGTCTTCTCCACACTGTGCAAGCAGTGACGTGTCAACCCTCACCGCTTCTACCACCTGTGACGGCAGTGACCACAAGAGTGTTGGTGCTATTCATCATCAGCATCACTTGCCCGTGAAGGCTGAATCGCTGGATGATGATTTCTGGTCTCAAGTTCTCTCACCTGGTAACTCCGGTGACACCAGCAGTTTTCCGGCCACCGGCCCGGCTGAACGGGACTTCCAATGTCCACTCTCTCCGTCGTTGACTTCGAAAGGGGTGCATTCGTCAAGTGCGTACGATAATGTGAAGTTCTGGTACGATGTGTACATGGGAGAACAAGAATTAGGAGAGTTCTGA 804 0.4826 MGRSPCSEGLGLNKGLWTREEDLILINHINKHGHKNWRALPTQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDMIIQLHENLGNRWSAIAAKLAGRTDNEIKNVWNTHLKKRSQQDKDTKRNHSLVCTQISKQQPVKALPTDHVIQTTEKKALSSPHCASSDVSTLTASTTCDGSDHKSVGAIHHQHHLPVKAESLDDDFWSQVLSPGNSGDTSSFPATGPAERDFQCPLSPSLTSKGVHSSSAYDNVKFWYDVYMGEQELGEF* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1984 267 CDD SANT 69 112 IPR001005 -
Pvu7g1984 267 PANTHER TRANSCRIPTION FACTOR MYB15 1 260 - -
Pvu7g1984 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 260 - -
Pvu7g1984 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu7g1984 267 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu7g1984 267 Gene3D - 14 66 - -
Pvu7g1984 267 CDD SANT 17 61 IPR001005 -
Pvu7g1984 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Pvu7g1984 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu7g1984 267 Gene3D - 69 115 - -
Pvu7g1984 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu7g1984 267 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu7g1984 267 SMART sant 13 63 IPR001005 -
Pvu7g1984 267 SMART sant 66 114 IPR001005 -
Pvu7g1984 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1984 Pvu-Chr7 43061894 43062954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1984 1 267 MYB Transcription Factor Family AT2G31180 44.118 4.37e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu7g1984 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1984 K09422 - gmx:106794951 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1984 7 43061894 43062954 Pvu1g1669 1 42151743 42153707 PCT