Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1980 ATGCCGTCGCTCCTCTCTCCGGGGAGAATCCACTGTCTGGAGGTGGACAATTTCAAGTCCTACAAGGGCTTCCAAATGATCGGCCCCTTCTACGACTTCACTGCCGTCATCGGCCCCAACGGCGCTGGTAAGTCCAACCTCATGGACGCCATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAGCTCCGCGGTGCGCAGCTCAAGGACCTCATCTACGCCCTCGACGACCGTGAGAAGGACCAGAAGGGTCGCCGAGCCTTCGTCCGCCTCGTCTACCACCTTGCCAACTCCACTGAGATCAGATTCACCCGCACCATCACCAGCGCCGGCTCCAGCGAGTACCGCATCGATGACACCCTTGTCAATTGGGACGCCTATAACAACAGACTCAAGTCCCTCGGCATCCTCATCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTCGAGTCCATTGCATCGAAGAATCCCAAAGAACTCACTGCACTGGTGGAGCAGATATCTGGCTCTGATGAGTGCAAGAGGGACTATGAACAGTTTGAAGAGGAAAAAGGCACTGCTGAAGAAAAATCAGCGCTTGCTTATCAGAAGAAGAAGACTGTGGTTATGGAAAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCCGCCTGCTACAAGAACTGAAATCTATGAAGAGAGAACATTTCTTGTGGCAGTTGTTTAATATACATAATGATTATGTTAAAACAATTAAGGATCTTGAAGATGAGGAGAGAAGTCGTGAAGGTGTTGTTAAAGAGCTGGAAAATTTTGAAAATGAAGCTAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTCAAAGAGATTGCACTGCGGGAAAAGAGAATTAATGAGAAAAACAGCAAGCTTGACAAGAGTCAGCCCGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCACTTCAAAAATTAAGAAAGGGAAGAAAGAACTTGATAAAAAAAAGGTTGAACGGACGAAGCATGATGCTGATATTGCATTGCTACAGAATGGCATCCAGGATCTTACAGCAAAAATGGTAGAACTTCAGGAAAAGGGACGCGATGTTGGTGATGAGCTTGATTTGCAAGGCAATGATTTGGATGAGTATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAAGAAAAGGAGCTTCTAGATAGGAAACTAAATGCTGATAGTGAAGCTCAAAATAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCTCAGGAAGAACAGATGCGAGCAAGGCTTGAAAAAATTCTTGATAATTCTGCAAAAAATAGAACTGGCCTTGAAAACTTGAAAAAAGAACTACGTGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAGTATGAAAATTTGAGGTTAAAAATTGGTGAAGTAGAAAATCAACTACGTGAATTGAGGGCTGATAGATATGAAAGTGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAGACTCTGAAACGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACAATGAAGAAGTATAACCTTGCTGTTACTGTTGCTATGGGCAAATTTATGGATGCTGTTGTAGTTGACAAGGAGTCAACTGGGAAGGAATGCATCAAGTATTTAAAAGACCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAATTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAGCTAAACTGGTGTTTGATTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAACACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGTGGAGAGAGGTTTAAAGTTGTAACTGTGGATGGAATTCTGCTCACAAAATCCGGCACAATGACTGGAGGCACTAGTGGTGGAATGGAGGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAAACAGAGTTGGAATCGCTAGGATCAATACGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCAGAGATTGAGAAGCGAAGCATTGAAGATAAACTTTCAAATCTGAGCCATGAAAAGAAGACAATCAAAGAAAGAATTGAATGTATCAGTCCAGAGCTAAAGAAGTTAAATGATGCTGTTAACAAGAGCAATGCAGAAATACGGAAGCTTGAGAGGAGGATAAATGAAATTACTGATAGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTAGCAAACATCCGTGAATATGAAGAAAATCGACTCAAGGCTGCTCAAAATATAGCAGAGGAGAGGCTGAACTTGAGTAGCCAACTTTCAAAATTAAAATATCA 2465 0.428 MPSLLSPGRIHCLEVDNFKSYKGFQMIGPFYDFTAVIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYALDDREKDQKGRRAFVRLVYHLANSTEIRFTRTITSAGSSEYRIDDTLVNWDAYNNRLKSLGILIKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEEKGTAEEKSALAYQKKKTVVMERKQKKEQKEEAEKHLRLLQELKSMKREHFLWQLFNIHNDYVKTIKDLEDEERSREGVVKELENFENEASKKKKEQAKYLKEIALREKRINEKNSKLDKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERTKHDADIALLQNGIQDLTAKMVELQEKGRDVGDELDLQGNDLDEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQNNLEENLQQLRNRESELNSQEEQMRARLEKILDNSAKNRTGLENLKKELRVMQDKHRDSKKKYENLRLKIGEVENQLRELRADRYESERDVRLSQAVETLKRLFQGVHGRMTDLCRPTMKKYNLAVTVAMGKFMDAVVVDKESTGKECIKYLKDQRLPPQTFIPLESIRVKPIMERLRTLGGTAKLVFDCKFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYETELESLGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSHEKKTIKERIECISPELKKLNDAVNKSNAEIRKLERRINEITDRIYRDFSKSVGVANIREYEENRLKAAQNIAEERLNLSSQLSKLKY 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1980 821 Pfam RecF/RecN/SMC N terminal domain 10 516 IPR003395 -
Pvu7g1980 821 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pvu7g1980 821 Gene3D - 578 659 - -
Pvu7g1980 821 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Pvu7g1980 821 Coils Coil 170 190 - -
Pvu7g1980 821 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 821 - -
Pvu7g1980 821 Coils Coil 307 327 - -
Pvu7g1980 821 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 821 - -
Pvu7g1980 821 Coils Coil 342 362 - -
Pvu7g1980 821 Gene3D - 498 577 - -
Pvu7g1980 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 287 IPR027417 -
Pvu7g1980 821 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pvu7g1980 821 Coils Coil 791 811 - -
Pvu7g1980 821 Gene3D - 8 218 IPR027417 -
Pvu7g1980 821 Coils Coil 454 502 - -
Pvu7g1980 821 Coils Coil 398 446 - -
Pvu7g1980 821 Coils Coil 750 777 - -
Pvu7g1980 821 Coils Coil 198 231 - -
Pvu7g1980 821 Coils Coil 708 742 - -
Pvu7g1980 821 SUPERFAMILY Smc hinge domain 481 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pvu7g1980 821 Coils Coil 251 285 - -
Pvu7g1980 821 Coils Coil 674 694 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1980 8 114 Structural Maintenance of Chromosomes family AT5G61460 31.579 5.26e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1980 K06636 - gmx:100785315 1449.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1980 7 43007508 43017035 Pvu7g1980 7 43007508 43017035 ECH