Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1975 ATGGGTCTTAGAGACATTGGTGCTTCACTTCCCCCAGGTTTTCGCTTCTATCCGAGTGATGAGGAGTTGGTCCTTCATTACCTTTACAAAAAGGTCACAAATGAGGAAGTTCTGAAGGGTACCTTGATGGAAATTGACCTGCACATATGCGAGCCATGGCAACTTCCAGAGGTGGCTAAGCTTAACGCAAACGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATACGCAACCGGCTACCGGACCAATCGCGCAACAACATCTGGGTATTGGAAAGCCACGGGAAAGGATCGGACGGTGTTTGACCCCTCCACGCGTGAGGTTGTAGGGATGAGGAAGACTTTGGTGTTCTACAGGAACAGGGCCCCAAATGGCATCAAAACGGGTTGGATCATGCACGAGTTTCGTTTGGAGACGCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGCAAAGCAGACAACAGTGCCAAACTCAACTCACAACTCATGTATGAGAGCACAGTTCCATCCCTAACTTTGGCTTCGTCATCTCCAACAAACCAAACCATTGGGTACAACCAACTTCCCCATTTCTCTTCCTCAATCACAACCCAAAACAACAACTCTTTCATGGGTCTCCTTCACTTTTCAAGGGAAACAAATGCAAACTCTAGCAGCATTACTCAAATAAGTCCCAAATGTGATGATGGGTACGGGTTTCTATGGGACATGGAGATGGAAGAAAATAGCTTCCATGATGGGGTGGCCTCGAATATGGTGGACGGAATGAGATTCGAGGTTGATAATAATAGTGTGGTGTTGTTATGA 828 0.4686 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKVTNEEVLKGTLMEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPSTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADNSAKLNSQLMYESTVPSLTLASSSPTNQTIGYNQLPHFSSSITTQNNNSFMGLLHFSRETNANSSSITQISPKCDDGYGFLWDMEMEENSFHDGVASNMVDGMRFEVDNNSVVLL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1975 275 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Pvu7g1975 275 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 270 - -
Pvu7g1975 275 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Pvu7g1975 275 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Pvu7g1975 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 270 - -
Pvu7g1975 275 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1975 Pvu-Chr7 42883129 42887532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1975 9 171 NAC Transcription Factor Family AT1G76420 55.689 7.50e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu7g1975 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1975 - - gmx:100783645 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1676 1 42237614 42243817 Pvu7g1975 7 42883129 42887532 PCT