Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1970 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGCGTAAAGTCTGCCAATCCAGAAGACATTGAACGCGACGTTTTGGAAAAGGCTACTAAGAATGATTCAGTGACCGTTACTGAAGGTGAAGGTAGTGCCAAGGAAGAACGTTCTGATTTAACTGAAAATGTCGATCCATCGGCTAATGCTAGAGCTGAACTTCATCAGAAGCTGAGAGCTGTTCAATTTGAAATTGATGCGGTTGCCTCCACAGTTGAGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTTGTGATGCTGGTGAAGACGGCTTGGTGCCAGGGACTGCTGAGGGTGATTCCTCCAACAATTCAAACCTTCAATGTGTTCTTGCTGCAGATAGGTTGAGGAGTCTGAAGAAGACGAAAGCTCAACTAGAGAAAAATCTTGTTAATTTGTCCAAGGATGATGCTTCCAAAAGTGTTGAGGATGAACAATTGATCTTAAGTTTAGTTAGGGAAGAACGTAAGCCCAAGAGGAAGGTTGAAGAAGACAAAAGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGATGATGATGTTGATTTTGATACTGTTCTAGATGCAGCCTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGGAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGCCGTTTTCATCAACTAGAAACATCAACTAGTCATAATGCTGATGAGGAAGAAACTGATGGTGATCTTGCTGCTGCCAGCGTTGAAAGAGCTGCCAAATCCATGTATGAGGCCGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCCCCAAAGCTTGATGCACCCACTTTTCCATTTCGAAGGCTCAAGAAACCGCTACAATCTTCCAAACCTCTAGATAGAGAGGTGGAGCTAAATAAAGATTCGAAAAGGAAAAAGAGGAGACCCGCGCCTGGTAGGAAGTGGACCAAGCGTGTTTCTTGTGAGGATACACGTCTGGAAGAAAGTGAAAACGCAGATGGTTGCTTGGATACTTCCAGTTTTGAAAATTTAGAAGAACAAGACATTGAATTTGATGATCATGAATCTTCGTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAAGATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGGTCTTATCGTTTCTTGGTGCATTGCACTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACACGATTCGGCTCACGATTGTGCTCCTAGAAAGAAGCAAGCTAAATCCGAAGAAACAGACTGTGAAAGCAATAGTTCAAGTGACAATGATTATGAGAAAAGTGTCCCATCTAGAAACACAAAAAAATGGGAATCCCTGATAAATCGTGTCATGAGGTCAGAGTCTGGATTACTTATCACCACTTTTGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTTGTTTGCAAGCAGCTACAAACTGTACATCGTATCATAATGACTGGTGCACCTATTCAGAATAAGCTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGTTGAATTTGCAGTTCCTATATCAGTTGGCGGATATGCAAATGCTTCACCTTTGCAAGTATCCACGGCATACAGGTGTGCTGTGGTGCTACGTGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAATATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTACGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGGGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACAACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCCTTAATGGACGAATTTAATGCCTCAAGTGAAATATTTATTTTCATTTTAACGACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATTATCTTTGACCCTGACTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGAGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATAACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACGAATAAGATATTGAAGAATCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCATACTTAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCTAATATTTTTAGTCAAATATCTGAAGAAATAAATGTCATTGGGACTCAGAAAAAAAATAAGGATGAGTATGAACATAGCCAAACTGCCAAACTGGATTCTGAAGATGTTGCAGTTAGTAATGATGACAAGTCAGGGGGAGGATCTTTGGAGAGAAAGGGGAAAGAGAAGGTTGAACCTAAGAATGGGATTGATGATGAAACAAATATTTTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGACGAGCAAGCATCCCAGGTTGCACGAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATTCTCAGAAGCCATGATAGTGTATCTGTTCCCACGTGGACAGGAAGGTCTGGAACTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTATGAATCCCCTGTTGGTAAATAAAAGCAAGGTATCTGACGAACTACCCAGCAAGGGAGCTACGAAGTTAAATGGATTCGCTGCTGGGGCATCTTCTGGTAAAGCATTATCTTCTGTCGAACTATTAGCTAAAATTAGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTTGAACATCAGTCTGGTACGTTTTCAAGTTCCTCGAGTCAAGCAAGATCTATAGATGTGAGATCCTCGAGGGCTACTGCAACTTCATCTGGATTACAACCTGAAGTATTGATTCGGAAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATTGTTGAGTACTTCAGGAAACTTATTCCCTCAGAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCCTATTGGGTTCTGAAACCAGAATATCAATTCTGA 3666 0.4198 MEEEEDRILLSSLGVKSANPEDIERDVLEKATKNDSVTVTEGEGSAKEERSDLTENVDPSANARAELHQKLRAVQFEIDAVASTVERLRNVENNEECCDAGEDGLVPGTAEGDSSNNSNLQCVLAADRLRSLKKTKAQLEKNLVNLSKDDASKSVEDEQLILSLVREERKPKRKVEEDKSKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFHQLETSTSHNADEEETDGDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLKKPLQSSKPLDREVELNKDSKRKKRRPAPGRKWTKRVSCEDTRLEESENADGCLDTSSFENLEEQDIEFDDHESSYVTLEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREANKWYPKFHVELLHDSAHDCAPRKKQAKSEETDCESNSSSDNDYEKSVPSRNTKKWESLINRVMRSESGLLITTFEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEVEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQISAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALMDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFILNVDGETGSTETSNIFSQISEEINVIGTQKKNKDEYEHSQTAKLDSEDVAVSNDDKSGGGSLERKGKEKVEPKNGIDDETNILKSLFDANGIHSAMNHDLIMNAHDEEKMRLDEQASQVARRAAEALRQSRILRSHDSVSVPTWTGRSGTAGAPSSVRRKFGSTMNPLLVNKSKVSDELPSKGATKLNGFAAGASSGKALSSVELLAKIRGNQEKAIGAGLEHQSGTFSSSSSQARSIDVRSSRATATSSGLQPEVLIRKICTFIQQRGGSSDSASIVEYFRKLIPSEDLALFKNLLKEIATLHKGSNGSYWVLKPEYQF* 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1970 1221 Pfam Helicase conserved C-terminal domain 740 847 IPR001650 -
Pvu7g1970 1221 MobiDBLite consensus disorder prediction 269 332 - -
Pvu7g1970 1221 MobiDBLite consensus disorder prediction 949 977 - -
Pvu7g1970 1221 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 245 1117 - -
Pvu7g1970 1221 MobiDBLite consensus disorder prediction 1124 1147 - -
Pvu7g1970 1221 MobiDBLite consensus disorder prediction 1121 1147 - -
Pvu7g1970 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 897 IPR001650 -
Pvu7g1970 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 653 910 IPR027417 -
Pvu7g1970 1221 Coils Coil 122 149 - -
Pvu7g1970 1221 MobiDBLite consensus disorder prediction 1041 1061 - -
Pvu7g1970 1221 MobiDBLite consensus disorder prediction 480 505 - -
Pvu7g1970 1221 MobiDBLite consensus disorder prediction 301 319 - -
Pvu7g1970 1221 CDD DEXHc_ERCC6 390 600 - -
Pvu7g1970 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 402 601 IPR014001 -
Pvu7g1970 1221 CDD SF2_C_SNF 733 858 - -
Pvu7g1970 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 651 IPR027417 -
Pvu7g1970 1221 SMART helicmild6 764 847 IPR001650 -
Pvu7g1970 1221 Gene3D - 657 953 IPR027417 -
Pvu7g1970 1221 PANTHER SNF2/RAD54 FAMILY MEMBER 245 1117 - -
Pvu7g1970 1221 SMART ultradead3 386 612 IPR014001 -
Pvu7g1970 1221 Gene3D - 360 650 IPR038718 -
Pvu7g1970 1221 MobiDBLite consensus disorder prediction 1 59 - -
Pvu7g1970 1221 Pfam SNF2-related domain 393 715 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1970 Pvu-Chr7 42799511 42806557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1970 362 900 RAD5 or RAD16-like Gene Family AT1G02670 22.259 3.23e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu7g1970 SNF2_N 3.9e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1970 K10841 - gmx:100820025 2085.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1970 7 42799511 42806557 Pvu7g1970 7 42799511 42806557 ECH