Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1960 ATGAAGTGTCTACGGTCAGGAGAGTCGTTTGGAGGAGCTGATGAAGTGTTTCCTTCATCTGGATCTCTTGCAAGTGCAACCAAGGACTTTTCAGCTAGTGAACACTCTTGCTTAGCTGAACACATTGATAAGAAGCAGGACACTGGGAACATAGAAGAAGCTGAATCATCCTTACGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTTTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGCATAGACATAGGTGTTGTGACTCCTAAGATTAAAATTGCCCTTTCCAGAAGCAGAGAACGCCGCAAGAGACATTCTCAAAATCATGCTGAACCGCAAATGTCAATACATTCTGTTGGCTTATTATTGGAATCTGTCTTCCTCAAAGCAAAATCTTTGCAGATTCTTGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAAGTTATTTTGGATATAGTGGAGTCTTCATTGCCTGAAGGCTTGCCTGATAACTTCGGTGCTGAATGTAAATTACAGGAGACCCTGAACAAGGCAGTTGAGCTGCTTCCAGACTTATGGAAACTTGCTGATTGTCCACGTGAAGCTATTTTGTCTTACCGGCGAGCACTACTTCATCAATGGAATCTTGATGCAGAGACTATAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTTTACAGTGGAGGAGAAGCCACACCGCCTAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAACAACATAGAAGAGGCTATACTTATCTTAATGATTTTGTTAAGAAAAGTTACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTCTCATTTGCTCTCTCAGTTTCTGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTTCCACGGACAATTCATAGAAGTGAAAGGTACTATGCTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGATCTGGTAGCACTGGATTTTCTCAGAAAGTTGTTGAGTAGTAGAGAGAACCAAGACCATGCTCCTGGTTTGTTATTGGCTTCTAAGATTTGTTGTGAGAACTGTTCTCTTGCTGAAGAAGGAGTAACCTTCGCCAAGCGAGTGCTTCAGAACTTGGACGGCAGATGTGATCAGCTAGAAGATCATGCCAATTTCTTTCTTGGTGTCTCACTTTCAGCACAGTCAAAATTGGCTATTTCTGATTCTGAGATGTTTAAGAGACAATCTGAGGCACTTCATGCCCTAGAAACTGCTGCCAGAACGAGAAACCCCCTTGTACTATATCATCTCAGTCTAGAATATGCAGAACAAAGGAAGTTGGATGCCGCACTTCAGTATGCAAAATGCTGTATAAAACTGGAAGCTGGTACTAATATTAAAGGATGGTTGTTGTTAGCCCGGATATTGTCTGCTCAGAAACAGTTTTTGGATGCCGAATCTA 1483 0.412 MKCLRSGESFGGADEVFPSSGSLASATKDFSASEHSCLAEHIDKKQDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKRHSQNHAEPQMSIHSVGLLLESVFLKAKSLQILERFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLNKAVELLPDLWKLADCPREAILSYRRALLHQWNLDAETIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILILMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPRTIHRSERYYALALCYYGAGKDLVALDFLRKLLSSRENQDHAPGLLLASKICCENCSLAEEGVTFAKRVLQNLDGRCDQLEDHANFFLGVSLSAQSKLAISDSEMFKRQSEALHALETAARTRNPLVLYHLSLEYAEQRKLDAALQYAKCCIKLEAGTNIKGWLLLARILSAQKQFLDAES 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1960 494 Gene3D Tetratricopeptide repeat domain 255 494 IPR011990 GO:0005515
Pvu7g1960 494 PANTHER PROTEIN NPG1 1 493 IPR043376 -
Pvu7g1960 494 PANTHER PROTEIN NPGR2 1 493 - -
Pvu7g1960 494 SUPERFAMILY TPR-like 135 492 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1960 Pvu-Chr7 42678174 42680521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1960 1 494 Calmodulin-binding Proteins AT4G28600 59.000 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1960 K21843 - gmx:100800762 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1960 7 42678174 42680521 Pvu1g1690 1 42399818 42404615 PCT