Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1959 ATAATTGCTTCTAGCTGCTTACCTTTTTTCCCTACCACACGACAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTACGTATGTGTATATCAGTCTTTTACAGTGGCATGACGCAGAGGTGTGTCTTTCAAAATCCAAGGCCATCAAACCACTCTCAGCATCTAGATATCATGCAATAGGCATAATGTACGAAGCAAAGGGCCATTACAAAGAGGCTCTAAAATCTTTTGGTGATGCTTTGGACATTGATCCTGGCCACGTCCTTAGCTTAGTCTCCAGTGCTGTAGTTCTTAAACGATGTAGTAGTCACTCAAATCCAACAGTTAAAAGCTTTCTGATGGACGCGCTACAGCAGGACAGATTCAATGCTTCTGCTTGGTATAATCTTGCCCTTCTTCACAAAGCTGAGGGCACAGCATCATCCTTAGCTGAAGCTGCAGAATGTTTTCAAGCTGCACATGTTCTTGAAGAATCTGAACCTGTTGAACCTTTCAGATGA 519 0.4258 IIASSCLPFFPTTRQDNRDRARNLEVEIWHDITYVYISLLQWHDAEVCLSKSKAIKPLSASRYHAIGIMYEAKGHYKEALKSFGDALDIDPGHVLSLVSSAVVLKRCSSHSNPTVKSFLMDALQQDRFNASAWYNLALLHKAEGTASSLAEAAECFQAAHVLEESEPVEPFR* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1959 172 PANTHER PROTEIN NPG1 15 172 IPR043376 -
Pvu7g1959 172 SMART tpr_5 130 166 IPR019734 GO:0005515
Pvu7g1959 172 SMART tpr_5 26 59 IPR019734 GO:0005515
Pvu7g1959 172 SMART tpr_5 60 93 IPR019734 GO:0005515
Pvu7g1959 172 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 15 172 - -
Pvu7g1959 172 Pfam Tetratricopeptide repeat 63 93 IPR013105 -
Pvu7g1959 172 SUPERFAMILY TPR-like 26 144 IPR011990 GO:0005515
Pvu7g1959 172 ProSiteProfiles TPR repeat profile. 60 93 IPR019734 GO:0005515
Pvu7g1959 172 Gene3D Tetratricopeptide repeat domain 12 168 IPR011990 GO:0005515
Pvu7g1959 172 ProSiteProfiles TPR repeat region circular profile. 60 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1959 Pvu-Chr7 42675307 42676637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1959 23 172 Calmodulin-binding Proteins AT4G28600 54.305 1.37e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1959 K21843 - pvu:PHAVU_007G1906001 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1959 7 42675307 42676637 Pvu7g1959 7 42675307 42676637 ECH
Pvu1g1690 1 42399818 42404615 Pvu7g1959 7 42675307 42676637 PCT