Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1954 ATGGAAGCACATCCTACTTTTTCCATTGAAAGATCAAAGCAACTCAATAACATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAGTCCTTCCAATACCCTCAGAAGACATGTATCTCAGGCTGCCTGAATCACAGTTGGATATAGTAGAACAAGACCTTGTGACAAGACCTTTTACTCATTCAAGTTATTTGAATTCCAATGGAGTAGTTGGGCATATTTTTTCGTCTTCCCCTGGATATTCAACTGATCTTCATCACTCATCTCTTTCACCCGATGAAAAACACTCTACTAATGCTCATTTTATTTCACAATCATCAACCAACATTTCCCAATTCCCTTTATCATACTCTTCAAATACTGGACCACCAAATTCAGCAACACCAAGCCACTTTTCCAAAGGAAACAGTGCTTCCTGGCATACAGGTTCCCTGCCGAATTTTCTAGATTTTCCTGCACATGACTCAATTGATGATAATAGGGTAGAAAGTAGTGCTTGCCCTATAATGGCATCCGAGGAGTATGGTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTTACTGACAATATTCAAGACATTGAGCCGAAGGTGCCATTTCAGGTTGCAAAACCACTTTCACAGTTTCCAGGACATCAATGCCAAGGTCAACAACAACTTCCTGCTTCCTTTGTAGACAATTGCATTGGCCTCTCTTGCTCAGCAAATTCAACTCCAGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCATTTGTAGAGGCTGTCAACCAACTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGGCCGGAGTCATCTGAAGGAGTTACGGAGAAAAAAGGAAGTTCCATTGAGGAGATGTCATCTCTAGATTTAAAAACTGGTATCGAGATTACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGCTCCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGTAAATCTGGAACGGAAACGTTGAAGGCATCATCATCTACCATTGAGACTCAATCTGGAGTATCTTCAAATGCCACGAGAGATTTCCCGGTCAAAAGTGTTTTGGAAGCATCACAAGGACCTGATCAAGCTAACGGCAGTACCCCAGTTGAGGAAGGCTCACTGGAAAAGGTTGGGAATCCTGATTCTCCCAAAACTCAACATGCTATTGCTAGTGGTGATAGTGCACAAGCCCCAAAACGTCAAAGAACAGAGTAA 1416 0.4244 MEAHPTFSIERSKQLNNMGMSGALSSSLSVLPIPSEDMYLRLPESQLDIVEQDLVTRPFTHSSYLNSNGVVGHIFSSSPGYSTDLHHSSLSPDEKHSTNAHFISQSSTNISQFPLSYSSNTGPPNSATPSHFSKGNSASWHTGSLPNFLDFPAHDSIDDNRVESSACPIMASEEYGKQNDWQEWAERLISDDDTLTSNWDDLLTDNIQDIEPKVPFQVAKPLSQFPGHQCQGQQQLPASFVDNCIGLSCSANSTPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVTEKKGSSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGTETLKASSSTIETQSGVSSNATRDFPVKSVLEASQGPDQANGSTPVEEGSLEKVGNPDSPKTQHAIASGDSAQAPKRQRTE* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1954 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 314 IPR017930 -
Pvu7g1954 471 MobiDBLite consensus disorder prediction 451 465 - -
Pvu7g1954 471 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 257 311 IPR006447 GO:0003677
Pvu7g1954 471 SUPERFAMILY Homeodomain-like 254 311 IPR009057 -
Pvu7g1954 471 MobiDBLite consensus disorder prediction 394 413 - -
Pvu7g1954 471 Pfam Myb-like DNA-binding domain 259 310 IPR001005 -
Pvu7g1954 471 MobiDBLite consensus disorder prediction 115 136 - -
Pvu7g1954 471 Coils Coil 345 365 - -
Pvu7g1954 471 MobiDBLite consensus disorder prediction 422 471 - -
Pvu7g1954 471 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 23 469 IPR044848 GO:0003700
Pvu7g1954 471 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 23 469 - -
Pvu7g1954 471 Gene3D - 256 315 - -
Pvu7g1954 471 Pfam MYB-CC type transfactor, LHEQLE motif 342 389 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1954 Pvu-Chr7 42632675 42642148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1954 32 414 G2-like Transcription Factor Family AT4G28610 48.214 5.53e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu7g1954 Myb_DNA-binding 8.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1954 - - gmx:100793593 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1954 7 42632675 42642148 Pvu7g1954 7 42632675 42642148 ECH
Pvu1g1699 1 42477170 42484680 Pvu7g1954 7 42632675 42642148 ECH
Pvu1g1699 1 42477170 42484680 Pvu7g1954 7 42632675 42642148 PCT
Pvu6g1099 6 22094653 22099268 Pvu7g1954 7 42632675 42642148 PCT