Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1950 ATGGCACCCAATAAAAGAGTGGTAGCGGCCTATCGTGCAATGGGAAGTCTTGGAATTGATGAATCGAAAGTGAAATCAGCGTTAAAGAAACTCCTGAAAGTGTTTGATAAAAACTGGGAACTTATCGAGGCAGAGAACTATAGAGTTCTAGCAGATGCTATATTTGAGGAGGACGATAATACGGTGCCCAAACTGAAAAAGAAAATCCAGTCTGACGATGTACACAGCACTTGTCATTCTTTGCCTTCCTTTTCAAACAACCAGGAAGATGAGACAGAGAGTGAAGAGGCTCAAATGCATAATGAAAGAGCACAACCTTTAAAAAGGCTGCGATTAAGAGACCAAGAGAGTCAGCCTTTGCATCCTCTGACTAACAGTGCCACCAGCCCTCCTTCAAAAAGGCCTAAATTAGAAGATAATGCATTACACCAGGGTTCTTTTGGGAAGAAACCTCAAAACAAACCAGAGTCATCTGATGGGAACCCAAGGATTGAAGCACCGTCACTTCGACTACCAGATGACATTGTTGACAAGGGAAAGCAGCCTGCATCAACCCAAGTTTTGCAAAGAGGAAGAAAACTTACATCTGGAAGATCGTCCCCATCCACACCATCTAAAGAACCAACAGTTGAATCGGGGAAGTTTCTGTTGCCAAACAACATGATGCCTCGTACTCAGGCACTTATCATACCCAAGGATGAGCCTATTGATGAAGTGCCTGATTATGAAATGCCCATTGCAGTGATTCCTCCTGAACCATCAAGCGTAAGGGACTCGTCATTGAAGAATGGTGTAGCTGGAAAGCATGTTAGCCATGTTACTGTTACATCATCAGAATGCAGAGATGGAGTCAGAGATGAAGATGCTAGTCCTACCTCAAATGAAGAAGCCACTTGTAATGTAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTATCTTTGAGCTGCAGCTCAGCACTTTGGGGATCAAAATTTCACATGCCTAGACGAGATGAAATTATAGAAATGATGGAGGAGAAATGCCTGTTTTCATATAAAATCGCTGACCCAAATTTCTCTGTTATGAAACTGTTGAGGGATCTATGCGATTGCATGTTGGAATTCGGAAACAACTCTAATAATGATCCAGAAGAAAGTTCTATACTAAGATCTAATGTTGATGTGTCGAAGGAATCACAGGAACCTGGCACACTGGATGTGGTTAGAAACAAAGATTTGGATATGCTTTCTGATGTTTCAAATGGACCCATCAATGTTAGTCCTTCTGCTGCAGTGGCTTCTCCCCAAAGTTTCCTTCTTCTTGCTGACCTGAATGGTGTGAATGATGCTGTCTTGGATTCCAAGATGGACCAAACAACAAATGATTTTTCACAATGTAATGTCAGGAAGGAGCTGGAATGTCCTATCTCTCCCAATTCACATAGTTTAGTGATTGTTCCACAGGATCAGCTAACAGCTGATGATATAAGGTCTTTTTATGATATTAGTGACCTTACAAAAGGAGAAGAAAATGTTGAAATTCCTTGGGTGAATGAATATACTAATGATTTCCCACCATCTTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAACATTTCTCTATCACGTGTTGGCAGTGAGGACTGTTGTTCAACTTGTGCGGGAAATTGTGTCTTGTCCATACCCTGTGCTTGTGCAAATAAAACTGGTGGTGAATTTGCATATGGTTCTCGAGGCCTACTGAAGGAACAATTCTTGAACAGTTGCATTGCCATTAGTCGCAATCCTCAAAAACATTTCTTTTATTGCAAAAATTGTCCACTTGATAGAATTAAGAATGATGGTGGTTTAGAACCTTGTAAAGGACACTTAAAAAGGAAGTTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAAACATTGTGGAAATCGGGTTATCCAGCGAGGAATGACTTGCAAATTGCAGGTGTTTTTCACTTCAGAAGGTAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCTAAAGGTGCATTTGTATGTGAGTTTGTTGGAGAAATTTTATCCATTAAAGAGTTGTACGAGAGGAACATGAAATGCACTGGAGAAGGGAAACATACATACCCAGTACTACTGGATGCAAATTGGGATTCAGGACATGTGAATAACAAAGAAGCTCTATGCTTGGATGCAGCTTCCTTTGGCAATATTGCTAGGTTCATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCAGTTGAAGTTGAGGATCCTGGCCATTATTACTATCATTTTGCTTTTTTCACTTCTAGAAAAATATCAGCACATGAGGAGCTAACATGGGATTATGGCATTGACTTTGATGATCATGATCATCCTCTCAAGCTGTTCCAGTGCAGTTGTGGCAGTAAATTCTGCAGGCATATGAAGAGGTCAAACAGATCTAACATATCTGCGTCAATTTCCGAATGA 2475 0.4085 MAPNKRVVAAYRAMGSLGIDESKVKSALKKLLKVFDKNWELIEAENYRVLADAIFEEDDNTVPKLKKKIQSDDVHSTCHSLPSFSNNQEDETESEEAQMHNERAQPLKRLRLRDQESQPLHPLTNSATSPPSKRPKLEDNALHQGSFGKKPQNKPESSDGNPRIEAPSLRLPDDIVDKGKQPASTQVLQRGRKLTSGRSSPSTPSKEPTVESGKFLLPNNMMPRTQALIIPKDEPIDEVPDYEMPIAVIPPEPSSVRDSSLKNGVAGKHVSHVTVTSSECRDGVRDEDASPTSNEEATCNVEIASSTLGEVKLSLSCSSALWGSKFHMPRRDEIIEMMEEKCLFSYKIADPNFSVMKLLRDLCDCMLEFGNNSNNDPEESSILRSNVDVSKESQEPGTLDVVRNKDLDMLSDVSNGPINVSPSAAVASPQSFLLLADLNGVNDAVLDSKMDQTTNDFSQCNVRKELECPISPNSHSLVIVPQDQLTADDIRSFYDISDLTKGEENVEIPWVNEYTNDFPPSFNYIPQNLVFQDAYVNISLSRVGSEDCCSTCAGNCVLSIPCACANKTGGEFAYGSRGLLKEQFLNSCIAISRNPQKHFFYCKNCPLDRIKNDGGLEPCKGHLKRKFIKECWSKCGCGKHCGNRVIQRGMTCKLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELYERNMKCTGEGKHTYPVLLDANWDSGHVNNKEALCLDAASFGNIARFINHRCFDANLVEIPVEVEDPGHYYYHFAFFTSRKISAHEELTWDYGIDFDDHDHPLKLFQCSCGSKFCRHMKRSNRSNISASISE* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1950 824 Coils Coil 85 105 - -
Pvu7g1950 824 ProSiteProfiles SET domain profile. 652 785 IPR001214 GO:0005515
Pvu7g1950 824 ProSiteProfiles Pre-SET domain profile. 548 649 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu7g1950 824 Pfam Ubiquitin-binding WIYLD domain 4 60 IPR018848 GO:0018024
Pvu7g1950 824 MobiDBLite consensus disorder prediction 118 133 - -
Pvu7g1950 824 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 378 820 - -
Pvu7g1950 824 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 311 - -
Pvu7g1950 824 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 823 IPR025776 -
Pvu7g1950 824 Pfam Pre-SET motif 500 644 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu7g1950 824 Pfam SET domain 664 785 IPR001214 GO:0005515
Pvu7g1950 824 MobiDBLite consensus disorder prediction 277 297 - -
Pvu7g1950 824 Gene3D - 1 60 IPR043017 -
Pvu7g1950 824 SMART set_7 652 791 IPR001214 GO:0005515
Pvu7g1950 824 CDD SET_SETDB-like 520 785 - -
Pvu7g1950 824 SMART preset_2 496 636 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu7g1950 824 Gene3D SET domain 482 794 IPR046341 -
Pvu7g1950 824 MobiDBLite consensus disorder prediction 93 116 - -
Pvu7g1950 824 MobiDBLite consensus disorder prediction 182 209 - -
Pvu7g1950 824 SUPERFAMILY SET domain 491 793 IPR046341 -
Pvu7g1950 824 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 378 820 - -
Pvu7g1950 824 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 311 - -
Pvu7g1950 824 MobiDBLite consensus disorder prediction 70 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1950 Pvu-Chr7 42607413 42616051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1950 628 810 C2H2 Transcription Factor Family AT2G23740 40.212 1.48e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu7g1950 Pre-SET 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1950 - - vun:114190802 1434.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1950 7 42607413 42616051 Pvu7g1950 7 42607413 42616051 ECH
Pvu6g1097 6 22076444 22083016 Pvu7g1950 7 42607413 42616051 PCT
Pvu7g1950 7 42607413 42616051 Pvu1g1703 1 42497653 42503349 PCT