Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1947 ATGCCCTTTCCCCTTTCTCTCTCTCTCCGACACACACACTCTCTCTCATTTCCATCAACATTCCCACCTAACCGTTTATTATACTTTTCTTCTTCTCCAAAAACTCAACTCCCTTCAAATTCATTCACCCTTTGGCCTGTTCTTCCTCAATTTCCCAAAAAGACAGATTGTTTGGTTCTGAGTGGTTGTGCTAGTGTTGGGTCGATGTCAACTGTGTCTAAAGATGACAACTTGGTGCTGTCTTCGGAGGACTCTTCTTGCCCAGAAGAGTCTGAGATCGAATTGGGTCTTGGGTTGAGCATCTCTGGCCCTCCTTCTAAGTCTCACCACCATGTCCATGCTCATGCTCCTTCTCCTTATGCTAGGATTTTCACTGCCAAGGCTTTTCCTTCTTCAGCAACACCATCACCTTCCTCTTCTTCCTCTTCTTCTCCCAACATCACTGCTGGCACCAAGAGAGCTGCTGAATCTCTTGTTGCAAATAATCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGGACATATAGAGTGAATAGCTGCAATATCCATGCAAAATCAACAGAAGTATTCGACTCAGTGACTGAGAAGAGTAAGGGCAATAATACTGTGGTAAGGAAGAGTGCTGACAATGGCAATGATTATAACATTAATGCCAAAGAAAAAAGACAGCTCAGGAGTTCCTTGTTCATCAAGGTAAATATGGATGGGATACCTATTGGGAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCACAAACGTTGGAGGATATGTTTAACGAATCAACTACAGTCACCACTTGCAAAGGAGCAAATGGTGAGGATCATGGAATTATTATTGGAGGAGAAATGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTACGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTCAGCTCGGTGAGGAGGCTAAGAATAATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTAGAAGAAAACATCAGACAGAAATGCAAACCCATATAG 1065 0.4357 MPFPLSLSLRHTHSLSFPSTFPPNRLLYFSSSPKTQLPSNSFTLWPVLPQFPKKTDCLVLSGCASVGSMSTVSKDDNLVLSSEDSSCPEESEIELGLGLSISGPPSKSHHHVHAHAPSPYARIFTAKAFPSSATPSPSSSSSSSPNITAGTKRAAESLVANNRPSQVVGWPPLRTYRVNSCNIHAKSTEVFDSVTEKSKGNNTVVRKSADNGNDYNINAKEKRQLRSSLFIKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGANGEDHGIIIGGEMHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEENIRQKCKPI* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1947 354 ProSiteProfiles PB1 domain profile. 228 335 IPR000270 GO:0005515
Pvu7g1947 354 MobiDBLite consensus disorder prediction 131 151 - -
Pvu7g1947 354 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 71 345 - -
Pvu7g1947 354 SUPERFAMILY CAD & PB1 domains 223 331 - -
Pvu7g1947 354 MobiDBLite consensus disorder prediction 131 160 - -
Pvu7g1947 354 Gene3D - 223 345 - -
Pvu7g1947 354 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 71 345 IPR003311 GO:0005634|GO:0006355
Pvu7g1947 354 Pfam AUX/IAA family 125 342 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1947 Pvu-Chr7 42569435 42573865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1947 221 352 B3 DNA Binding Superfamily AT1G59750 34.328 2.48e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu7g1947 AUX_IAA 4.5e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1947 K14484 - gmx:100779400 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1947 7 42569435 42573865 Pvu7g1947 7 42569435 42573865 ECH
Pvu1g1709 1 42556127 42559098 Pvu7g1947 7 42569435 42573865 PCT