Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1936 ATGTCCACCGCCGCGCAAACCAGAGTCAAGAAAACAGCGGCCACCAAGAAGCCCCTCTCCCATCCTACCTTTGCCGTGATGATAACGGAGGCCATTGCGAGTCTGAAGGAGAGAACTGGGTCCAGCCAATATGCGATAACGAAATTCATTGAAGGAAAGCACAAGGAGTTGCCTCCTACCTACAAGAAACTTGTTCTCCTTCATCTCAAGAAGTCTGTTGCTGCTGGCAAGCTTGTCAAGGTCAAAAACTCCTTCAAACTTGCACCCACCAAATCTGCACCCACCAAACCTGCCCCGGTTAAGGCTACTATTGCTGTTCCTAAAAAGCCTAAGTCTGTTGCCAAACCCACCGCCAAGGCCGCCACCAAGTCCAAGGCTGCTCCTAAGAAGAAGGCTGTTGCTAAGCCCAAATCTAAGACTGCTGCTGCAGCTGCCAAGCCTGCTAAGGCAGCAGCCAAGAAGGTTGTTGCCAAGTCTGCCAAGAAGACTCCTGTAAAAGCCGTGAAGAAGGCCAAGAGTGTGGTAAAGAAACCCAAGAGTGTGAAATCTCCGGCCAAGAAGGCCAAGAAGTGA 573 0.5096 MSTAAQTRVKKTAATKKPLSHPTFAVMITEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLLHLKKSVAAGKLVKVKNSFKLAPTKSAPTKPAPVKATIAVPKKPKSVAKPTAKAATKSKAAPKKKAVAKPKSKTAAAAAKPAKAAAKKVVAKSAKKTPVKAVKKAKSVVKKPKSVKSPAKKAKK* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1936 190 MobiDBLite consensus disorder prediction 107 190 - -
Pvu7g1936 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu7g1936 190 MobiDBLite consensus disorder prediction 155 190 - -
Pvu7g1936 190 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g1936 190 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g1936 190 PRINTS Histone H5 signature 117 131 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g1936 190 PRINTS Histone H5 signature 154 171 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g1936 190 PRINTS Histone H5 signature 176 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu7g1936 190 PANTHER HISTONE H1 2 189 - -
Pvu7g1936 190 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu7g1936 190 SUPERFAMILY "Winged helix" DNA-binding domain 17 98 IPR036390 -
Pvu7g1936 190 CDD H15 20 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu7g1936 190 Gene3D - 15 99 IPR036388 -
Pvu7g1936 190 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu7g1936 190 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1936 Pvu-Chr7 42467490 42468639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1936 22 108 Single Myb Histone (SMH) Gene Family AT1G72740 32.184 6.19e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1936 K11275 - gmx:100810590 155.221