Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1930 ATGGTGTCGAGCCAGGTAGTGAAAGTGAAGAGAAATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAACTTATACAAAGATGCCACCACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGATAAACTATCGGATGAGGAGATGGATTGCTGTCCTGTGTGCAACATTGATTTAGGCTGCCTTCCGGTGGAAAAGCTCAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAATTTTCCCGTTTAGAAGAAAAAAGATCAAGGCCCAGGAACCTTTGTCTTCAATATCATTGCCAACTAAAAGGAAGGAAAGATCACTTTCATCATTGGTAGTCAGTGCCCCCAAAGTTTCAATGCAACCCGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTTGAAGAATCCATAAAGAAGGAAGAAACAAATGGTGAAGATAATACGGATTCTTTCATGGCTGAGCCTTCTAAAAAGCATAAGCCTAATGAAGATAAAGAGAACAGTGTGGAACATGCAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAACTGCTGTTGCCAAATTAGAGTCCCTAGTTACTCCTCATGGTGGACAAAATATACCTGAAATTACAACCAAAACAGACCTACCTGCTTCTGTCCAGAGTGAACTAAACATTCCAAAATCCAAAAATAAGGATACTGGACATAAAACATTATTTGGGGACGACAAGGATGCAAACAGCTTGCCTTCAGGACCAGTGAAGAGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTGCCTCATCCCCAGCTCCACTAAATGCAACAGGGAGCAAAAGCAATAGAAAAAACAGTCCTATTTGGTTTTCATTGGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCCGTCTCATTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTTCCAGTGAAGCAGAGGTGGAAATAATGTGTCGGGGTCAGACAGTGCTCCCATCATTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCCTCAACCTCAAAGAGGATACCAGCATCAGTAGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCGTATTGTCGAAAGGCCTTGTCCTCTTGA 1299 0.428 MVSSQVVKVKRNTLRPCMTCPLCHNLYKDATTISLCLHTFCRKCIYDKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFRRKKIKAQEPLSSISLPTKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAALRGCSFLLEESIKKEETNGEDNTDSFMAEPSKKHKPNEDKENSVEHAEGKVDLWTPLNCLVEAANRTKSSRSNSQATAVAKLESLVTPHGGQNIPEITTKTDLPASVQSELNIPKSKNKDTGHKTLFGDDKDANSLPSGPVKRRRLRPAGQKRVAASEMSASSPAPLNATGSKSNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLSSEAEVEIMCRGQTVLPSLQLHNLVDLWFRTASTSKRIPASVGSSAKDFVMVLSYCRKALSS* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1930 432 MobiDBLite consensus disorder prediction 234 258 - -
Pvu7g1930 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Pvu7g1930 432 MobiDBLite consensus disorder prediction 299 318 - -
Pvu7g1930 432 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 430 - -
Pvu7g1930 432 MobiDBLite consensus disorder prediction 226 318 - -
Pvu7g1930 432 Gene3D - 309 407 - -
Pvu7g1930 432 MobiDBLite consensus disorder prediction 259 273 - -
Pvu7g1930 432 SUPERFAMILY RING/U-box 14 85 - -
Pvu7g1930 432 MobiDBLite consensus disorder prediction 155 191 - -
Pvu7g1930 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 430 IPR044807 GO:0004842
Pvu7g1930 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Pvu7g1930 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Pvu7g1930 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Pvu7g1930 432 SMART ring_2 20 60 IPR001841 -
Pvu7g1930 432 MobiDBLite consensus disorder prediction 155 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1930 Pvu-Chr7 42431442 42436730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1930 1 351 C3H Transcription Factor Family AT2G30580 42.703 1.15e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1930 K16277 - gmx:100783999 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1930 7 42431442 42436730 Pvu7g1930 7 42431442 42436730 ECH