LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu7g1897	ATGCCTGTTCCTAACGGAGAAGAGCAGGTTCTGTCTGCTTCAGAAAATGCAAGTGAGGTTGCAAAGTCACCCTCGTTGGATTTGAACCCAGATTCAGATTCAGTTGATGGGTCCCCACCTGTTTCCACCTTTTACACTGATGTGGGTGTCGTGCCAGAACACCAAAAGAACGAGCTTGAGCACTTGATATCCAATTTAGAAAGAGAAATTGAGGAGTTGAGGGTCAAGCAGAAGAAATTGGATAAAAAGCGGAGAGAAGCACTGAGCAAGATATTGGACATCAAAGGGAGCATTCGCGTGTTTTGTAGAATTCGACCAAATCTGGTAACGGAGAAGAGAAGAATTTCTGAACCGGTATCAGCTGGACCAGAGAAAATTCGGGTTAAGTTGGGGGGAACAAGGAAAGATTTTGAGTTTGATAAAGTTTTTACTCAAGAAACAAGCCAAGAAAGTGTTTTTGTTGAGGTTGAGCCAATTCTGAGATCTGCAATGGACGGGCACAATGTATGTGTGTTTGCTTACGGTCAAACAGGCACAGGCAAGACATTCACCATGGATGGTACAAACGAGCAGCCTGGAATTATTCCGCGTGCTCTTGAAGAGCTCTTTCATCAAGCCTCTTTGGATAGCTCATCTGCTTTCACCTTTTCAATGAGCATGTTGGAAGTTTATATGGGCAATCTCAGGGATTTGCTAGCTCCAAGACCGTCTGGTAGACCACATGAACAACCTGTGACGAAGTGCAATCTCAACATCCAGACCGATCCAAAGGGGTTGATTGAGATTGAGGGTCTCTCTGAAGTGCAAATAAGTGATTATGCTAAAGCCAAATGGTGGTACAACAAGGGCAGAAGGTTCAGATCCACCTCGTGGACTAATGTGAATGAAGCATCAAGCAGGTCACACTGCTTAACGAGGATAGGCATATTTCGACGTGGGGATGCTTTGGAAGCTAAAAGTGAAGTAAGTAAACTGTGGATGGTTGATCTTGGAGGCAGCGAACGGTTGCTTAAAACTGGAGCCAAAGGACTGACACTGGATGAGGGCAGAGCCATTAATCTTTCTCTTTCAGCTTTAGCTGATGTTGTTGCAGCTTTGAAGAGGAAGAGGTGTCATGTGCCTTATAGGAATAGCAAGCTGACTCAATTACTGAAAGATTCTCTTGGGTATGGCTCAAAGGTCTTGATGCTGGTGCATATAAGCCCTTCTGAAGAAGATGTGTGTGAGACGATTTGCTCCTTGAACTTTGCAAAGAGAGCGAGAGCAATAGAGTCCAATAAAGAAGTGCCCGTGGAAGTGAAGAAGCAAAGGGAGAAGAAGATTACGGAGCTAGAGGAAGACATCAAGGAAGCTGAAAAACAAAGCCAGAATTTAAGGGAACAAAGAGAGAAGATTGAGTTGAAGTTAAAGGATAGTAAAAAGCTCTTATCAAGCACAGATAGTCTTGTGGAAAGTGATGACATGAGAGCCTCAATTAGTCCTCCCAAAGATGATGTGAAAGAGGTGATTGAAACCCCTAAAGCGTCTAAGAAGTCCACTAAAAGAAATTTCTCCAACTCAATGCCTCGATTCATGACTTCGACAGTTGCAAGTCGCCAAAGGAAAAGTGCTGCAGAGCGAGACATTGGCACTGTGAAATTCAAAAGCTATAGATCAACACAGTCTAGAAGTTCCATCCATTTTTCGTATTCCCAATCGTTGAGTTATTCAGATATCCGCATCAAAGCATTACTGCGAAGTTCAAACGGAAAATCTGGGCATGCCGAAGCAGACAGTGTTCCAATTCCAGACCCTGTTCTCACAGAAAGGCCTAAAGGCAATGATTTGGAATCAAAAGTCACAACCCCTCGAAGCAGGATGGTTACATCTTCAGACCAAAACTTGAGAGTTTCACTGGGTCGTCACAGAAGAAGGATGTCTGATCTGATCTAA	1932	0.4374	MPVPNGEEQVLSASENASEVAKSPSLDLNPDSDSVDGSPPVSTFYTDVGVVPEHQKNELEHLISNLEREIEELRVKQKKLDKKRREALSKILDIKGSIRVFCRIRPNLVTEKRRISEPVSAGPEKIRVKLGGTRKDFEFDKVFTQETSQESVFVEVEPILRSAMDGHNVCVFAYGQTGTGKTFTMDGTNEQPGIIPRALEELFHQASLDSSSAFTFSMSMLEVYMGNLRDLLAPRPSGRPHEQPVTKCNLNIQTDPKGLIEIEGLSEVQISDYAKAKWWYNKGRRFRSTSWTNVNEASSRSHCLTRIGIFRRGDALEAKSEVSKLWMVDLGGSERLLKTGAKGLTLDEGRAINLSLSALADVVAALKRKRCHVPYRNSKLTQLLKDSLGYGSKVLMLVHISPSEEDVCETICSLNFAKRARAIESNKEVPVEVKKQREKKITELEEDIKEAEKQSQNLREQREKIELKLKDSKKLLSSTDSLVESDDMRASISPPKDDVKEVIETPKASKKSTKRNFSNSMPRFMTSTVASRQRKSAAERDIGTVKFKSYRSTQSRSSIHFSYSQSLSYSDIRIKALLRSSNGKSGHAEADSVPIPDPVLTERPKGNDLESKVTTPRSRMVTSSDQNLRVSLGRHRRRMSDLI*	644

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu7g1897	643	PANTHER	KINESIN-LIKE PROTEIN KLP-3	2	638	-	-
	Pvu7g1897	643	ProSiteProfiles	Kinesin motor domain profile.	97	423	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu7g1897	643	MobiDBLite	consensus disorder prediction	9	41	-	-
	Pvu7g1897	643	Pfam	Kinesin motor domain	125	423	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu7g1897	643	Gene3D	Kinesin motor domain	92	469	IPR036961	-
	Pvu7g1897	643	SMART	kinesin_4	95	431	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu7g1897	643	MobiDBLite	consensus disorder prediction	613	627	-	-
	Pvu7g1897	643	MobiDBLite	consensus disorder prediction	1	41	-	-
	Pvu7g1897	643	MobiDBLite	consensus disorder prediction	583	627	-	-
	Pvu7g1897	643	PANTHER	KINESIN-LIKE PROTEIN KIN-14D ISOFORM X1	2	638	-	-
	Pvu7g1897	643	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	97	463	IPR027417	-
	Pvu7g1897	643	Coils	Coil	434	475	-	-
	Pvu7g1897	643	PRINTS	Kinesin heavy chain signature	166	187	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu7g1897	643	PRINTS	Kinesin heavy chain signature	292	309	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu7g1897	643	PRINTS	Kinesin heavy chain signature	324	342	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu7g1897	643	PRINTS	Kinesin heavy chain signature	373	394	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu7g1897	643	Coils	Coil	56	90	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu7g1897	Pvu-Chr7	42067550	42070656	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu7g1897	69	423	Calmodulin-binding Proteins	AT5G65930	39.510	8.31e-70	244

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu7g1897	-		-	gmx:100785581	1085.86

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu7g1897	7	42067550	42070656	Pvu7g1897	7	42067550	42070656	ECH