LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu7g1888	ATGGAGTGCAACAAAGAAGAGGCTGTGAGGGCTAGGCAAATGGCCGAAGCTAGAATGCAAAGAGGTGAATTTGTGGAGGCTCTCAGGTTTGCTACTAAGGCTAAAAAACTGTATGCTGATGTTGAAAACATTACTCAGATTCTTACTGTCTGCGAGGTTCACAATGCTGCGCATAAAAAGGTGTCTGCCACTGACATGGACTGGTATGCGTTACTTCAGATTGAAAGATTGGCTGATGAAGCAGTCATTAAGAAACAGTACAGGAGGCTTGCACTGCTACTTCACCCTGATAAGAACAAGTATGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGCAAGCCAATGGGGTCTTGAGTGACCAAGCAAAACGTTCTTCGTATGACAGCCAGTATGGAATCTCTGTGAGAGCAGCTGCGCCGAAATCCACTAGAAAACGTAATGCAAAAAAAGGTCAGAAGAATTCTGAATCACACCATAACTCAGATGGGAACGTGTTCACTGCAAAACATGATGAAAATGCAACAAATGTTCAGAATAATTCTTATCCGAACACCGCCGGTCCCAACAGCCAAGCTGGACCGATGACATTCTGGACATCTTGCCGACATTGTAACTTTACGTTCCAGTACTCCATGCAATATGTGAATGCAAACTTATTGTGTCTGCAGTGTTTGAAGCCATTTAAAGCTCGTGTTATAAATTTTGGTGTCCCATCTTCAACGTTTACTTCAGTAAATATGCAGAACGAGGGTCCAATTCCTGGTCCCCCAAAACCAGATTCAGCAAGCACTGGTCAGAAACACTTTGGTAGAGAACGTACTGCCAGGTTTGTGCCGTCAGATACTACATCTATGAAAAAATGTGATGCAAGAGTTGGTGCTCATAGTGAAAAGGGTAAAGATGGCTCTGTTCCTGCATCCAAAGTCATGGAGTCACAATCCTCTAAAAATGTTGGAAGTAAGAGAGTAAGGCAGTCAGCACCAGATTCGGGAGAAAGCTCCAAAGCTGGAAATAGTGATGAGATGAGAGATGCCAATGCTCCAGAACATGATCTTGACCATTCAAAAGTTGGTGCAAGGAGATCTACAAGGAAAAAACAGCATGTTTCATATACGGAAACCTCTGAAGATGACGATCTTAAAATTCCTTCCAAAGCGTCACAAACAAATGAACCACTTAATGCGGATGACGTTGAGAATAAGAATGTGCCCACAAGTAATGGATCGTCCAACAGCGACAATCCAGCTACTTCAGCTGCTGGTGTGGCTGATCAGAACACAGAGAAGGTATCCGAGTCAAAAGAGTATAACTGCTCTTCATTGAATTCAAATGTTCCTTCTAGTCCAAAGATCCTTCCTTGTTTTGACGCAGAATTCAATGATTTCGAAATGGATAAGGAGGAGGATCGCTTTGCTGCTAAACAAATTTGGGCAATATATGATACCGATGATGCGATGCCAAGATTTTATGCTATAGTCAGGAAAGTGATTTCCCCTTTCAAGTTGCACATTACTTGGTTGGAGGCTGATCCAGATGGCGAAGACGAGCTTGATTGGCAAGAAGCAAATTTGCCTATTGCCTGCGGTAAGTTCAGACTCGGTAATTCTCAGAAAACTACAGATCGTACTATGTTCTCTCATCAGGTGCGGTACATAAAAGAAACTGGCAAACGGTCTTATCTGGCATATCCCAATAAAGGAGAAACTTGGGCAATTTTCAGAGATTGGGATATCAAATGGAGTTCTAATCCAAAGAAACATTTGGAGTATGACTATGAATATGTGGAGATCGTATCAGATTTTTCTGAAAACGTGGGCATCGCTGTTGCTTCTCTGGACAAAGTGAAAGGATTTGCAAGCCTCTTTCAGAAAACTTGCGAGAATGGAGTGGACGTTTTTTACGTCCGGCCTAATGAGCTTTATAGGTTCTCGCATCAAATTCCTTCTTTTAAGATGTCTGGTAATGAGAGGGAGGGTGTTCCAAGAGGATCTTTTGAATTTGATCCTGCTTCCCTGCCTTCTAATCTTTTTGAAGTTGGTGATTCGGGTAAATTTAAAGATGAATAG	2067	0.4238	MECNKEEAVRARQMAEARMQRGEFVEALRFATKAKKLYADVENITQILTVCEVHNAAHKKVSATDMDWYALLQIERLADEAVIKKQYRRLALLLHPDKNKYAGAEAAFKLIGQANGVLSDQAKRSSYDSQYGISVRAAAPKSTRKRNAKKGQKNSESHHNSDGNVFTAKHDENATNVQNNSYPNTAGPNSQAGPMTFWTSCRHCNFTFQYSMQYVNANLLCLQCLKPFKARVINFGVPSSTFTSVNMQNEGPIPGPPKPDSASTGQKHFGRERTARFVPSDTTSMKKCDARVGAHSEKGKDGSVPASKVMESQSSKNVGSKRVRQSAPDSGESSKAGNSDEMRDANAPEHDLDHSKVGARRSTRKKQHVSYTETSEDDDLKIPSKASQTNEPLNADDVENKNVPTSNGSSNSDNPATSAAGVADQNTEKVSESKEYNCSSLNSNVPSSPKILPCFDAEFNDFEMDKEEDRFAAKQIWAIYDTDDAMPRFYAIVRKVISPFKLHITWLEADPDGEDELDWQEANLPIACGKFRLGNSQKTTDRTMFSHQVRYIKETGKRSYLAYPNKGETWAIFRDWDIKWSSNPKKHLEYDYEYVEIVSDFSENVGIAVASLDKVKGFASLFQKTCENGVDVFYVRPNELYRFSHQIPSFKMSGNEREGVPRGSFEFDPASLPSNLFEVGDSGKFKDE*	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu7g1888	688	MobiDBLite	consensus disorder prediction	246	435	-	-
	Pvu7g1888	688	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Pvu7g1888	688	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Pvu7g1888	688	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Pvu7g1888	688	MobiDBLite	consensus disorder prediction	385	435	-	-
	Pvu7g1888	688	Gene3D	DnaJ domain	49	148	IPR036869	-
	Pvu7g1888	688	Pfam	DnaJ domain	67	128	IPR001623	-
	Pvu7g1888	688	SMART	dnaj_3	66	123	IPR001623	-
	Pvu7g1888	688	MobiDBLite	consensus disorder prediction	336	358	-	-
	Pvu7g1888	688	CDD	DnaJ	67	120	IPR001623	-
	Pvu7g1888	688	MobiDBLite	consensus disorder prediction	307	335	-	-
	Pvu7g1888	688	PANTHER	-	1	684	-	-
	Pvu7g1888	688	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Pvu7g1888	688	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN	1	684	-	-
	Pvu7g1888	688	MobiDBLite	consensus disorder prediction	366	384	-	-
	Pvu7g1888	688	MobiDBLite	consensus disorder prediction	138	167	-	-
	Pvu7g1888	688	Pfam	Domain of unknown function (DUF3444)	452	656	IPR024593	-
	Pvu7g1888	688	SUPERFAMILY	Chaperone J-domain	61	131	IPR036869	-
	Pvu7g1888	688	MobiDBLite	consensus disorder prediction	288	304	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu7g1888	Pvu-Chr7	41970269	41973105	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu7g1888	47	233	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT5G64360	29.630	1.37e-19	90.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu7g1888	-		-	gmx:102662460	910.983