Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1870 ATGTGTTTGCCCGAGGGAGAGAGAGACAGAGAGAGAGCCATGGCACTGGAAGCAGTGGTGTTTCCACAATCACAAGACCCTTTTGGATCAGTGAAGGACTTTTACAACTGCACCTTCTTGGCTGCTACTTCACCCAACTGGGGGGACTGTGAACACATCAACATCAACATCGACAAAGAAGAAGAACAAGGTTCCATCTCTACTTTTCTCGAAAATAATACCAACCAACCAAACAATTACCCTTATGGAGGAGATTGGACCAGCTCCTCCTCCTCTATCTTACCCCACTTGAATGAACTTCAAGAAACCACAGACCCCAGTAGCAGCACTCAAAACTTGGATAGCTTAACCACTCGTCCAAAGAGGCGCAGAGCAAAAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTGGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAGGAGCTTGAGCAGAGGCTGCATTTTCTTGGTTCTCAGAAAGAAGGAGAGGGGAAATCTGATGCTGGTGGTGCAACAAACATGCCCTTTTCAGAGTTCTTCGCCTTTCCGCAGTATTCAACAAGTGGCGGTGGTGGCTCTGATAATTCTGCAACCATAGGTGAAGACGTGGCTGAAGTTAAGTATGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAAGCAACTCTTGAAGTTGGTCTCTGGTTTGCATACTATGCGCCTCACAATCTTGCACCTAAATGTTACTACCACTGCTGAAGTTGTACTCTACTCTCTAAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCCGTTGATGATATAGCTGAAGCTGTGTACCAGACGCTGGATAGGATTCAGCAAGAGGCAGTGTTGAATTAA 1014 0.4487 MCLPEGERDRERAMALEAVVFPQSQDPFGSVKDFYNCTFLAATSPNWGDCEHININIDKEEEQGSISTFLENNTNQPNNYPYGGDWTSSSSSILPHLNELQETTDPSSSTQNLDSLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGSQKEGEGKSDAGGATNMPFSEFFAFPQYSTSGGGGSDNSATIGEDVAEVKYGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTAEVVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQEAVLN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1870 337 MobiDBLite consensus disorder prediction 100 133 - -
Pvu7g1870 337 SMART finulus 142 193 IPR011598 GO:0046983
Pvu7g1870 337 MobiDBLite consensus disorder prediction 100 116 - -
Pvu7g1870 337 PANTHER MAX DIMERIZATION, MAD 14 337 - -
Pvu7g1870 337 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Pvu7g1870 337 Gene3D - 121 201 IPR036638 GO:0046983
Pvu7g1870 337 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 337 - -
Pvu7g1870 337 CDD bHLH_AtFAMA_like 139 211 - -
Pvu7g1870 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 199 IPR036638 GO:0046983
Pvu7g1870 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1870 Pvu-Chr7 41864073 41865949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1870 14 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.038 1.25e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu7g1870 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1870 - - pvu:PHAVU_007G181900g 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1870 7 41864073 41865949 Pvu7g1870 7 41864073 41865949 ECH
Pvu6g0981 6 21188367 21190356 Pvu7g1870 7 41864073 41865949 PCT