Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1865 ATGGATCATCAAGGGCATGGGCATGGTCAGAACCCATCTCTGGGAGTTGTTGGAAGTGGACCTCAACTCACCTATGGTTCTAATCCATACCAGGCCAGCCACATAACAGCCTCACCTGGGATGGTTGTTGCATCACCTGGGACCATTCAATCCACTGGTCAACCAGCTGCAACTCAACTAGGACAGCATCAACTTGCTTATCAGCACATGCATCAGCAACAACAGCAGCAGCTGCAGCAAAGACTTCAAGCCTTCTGGACAAATCAATATCAAGAAATTGAGAAGGTGACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATAAAAAAGATTATGAAGGCCGATGAGGATGTCAGAATGATATCAGCTGAGGCACCTGTCATATTTGCAAGGGCATGTGAAATGTTCATATTGGAGCTAACCTTGCGTTCTTGGAACCATACTGAAGAGAACAAAAGGAAAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACTATAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTGTACCAGTTACAGGGGCCCCTGAGGCACTTCCTTACTGTTATATGCCACCTCAACATGCACAAGTTGGAACTGCTGCTGTCATGATGGGTAATAACCCTGTGATGGATCCTTATGCTCAACAGTCTCATCAATACAGCATGGCACCGCAAATGTGGCCACAGCCACCAGAGCAACAACAATCATCTCCAGACCAGTAG 786 0.4593 MDHQGHGHGQNPSLGVVGSGPQLTYGSNPYQASHITASPGMVVASPGTIQSTGQPAATQLGQHQLAYQHMHQQQQQQLQQRLQAFWTNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRKTLQKNDIAAAITRTDIFDFLVDIVPREDYKDEVLASMPRGTVPVTGAPEALPYCYMPPQHAQVGTAAVMMGNNPVMDPYAQQSHQYSMAPQMWPQPPEQQQSSPDQ* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1865 261 SUPERFAMILY Histone-fold 68 175 IPR009072 GO:0046982
Pvu7g1865 261 MobiDBLite consensus disorder prediction 15 29 - -
Pvu7g1865 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 261 - -
Pvu7g1865 261 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Pvu7g1865 261 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 261 - -
Pvu7g1865 261 MobiDBLite consensus disorder prediction 241 261 - -
Pvu7g1865 261 MobiDBLite consensus disorder prediction 1 29 - -
Pvu7g1865 261 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1865 Pvu-Chr7 41781066 41782914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1865 1 227 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.965 2.84e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu7g1865 CBFD_NFYB_HMF 1.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1865 K08066 - gmx:100785287 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1865 7 41781066 41782914 Pvu7g1865 7 41781066 41782914 ECH
Pvu6g0974 6 21135880 21138805 Pvu7g1865 7 41781066 41782914 ECH
Pvu6g0974 6 21135880 21138805 Pvu7g1865 7 41781066 41782914 PCT