Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1846 ATGGCACCAACAAGGAAATCTAGAAGTGTTAGTAAGCGGATTTCAAATTCAAGTGATGTTTCTCCTGAGAAAGATGGTGTTAATTCAAATAAAAACAAGCATCGGAAGAAAAAGTTGACTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAACTAGAAGGATTTTATGAAGCATATAGAATGTATGGGAAAGACTGGAAGAAGGTGGCTGGTGTTGTACGAAATAGAACCACTGAAATGGTAGAAGCTCTTTACAATATGAATCGGGCATATCTCTCTCTGCCAGAGGGCACGGCTTCTGTTGTTGGCCTCATAGCAATGATGACTGATCACTACAATGTGCTGGAAGAGAGTGACAGTGAAAGGGAGAGCAGTGATGCACTAGGACCTCGGAAATTTATAAAACGAAAGCGGGAAAAAGTTCAGCTTAGTGTCTCTAAAGACCAGTCTCATTCAATTGCTTCCAGTGAAGGTTGCCTCTCTTTATTGAAGAAGAGACGCTTAGATGGTATCGTGCCTCATGCTGTTGGTAAAAGGACTCCTCGTGTCCCAGTTTCTTATTCTTATAAGAAAGATTACACAGAAAATTATGTTTCGCCTTATAGAAGAAGCCTGAAGTCAACTACTGATGCCAATGATGATGAAGTTGCACATGTTGTAGCTTTGGCCTTAACTGAGGCTGCACAAAGAGGAGGCTCTCCCCAAGTTTCTCAATCACCACGTAGAAGAGTAGAGCAAAAACCCTCACCTGTACAGCGCTGGGAAAAGAAGCATCAAGTGTCAGAGACAACTCGTGCCAAGTTACACAATCTTTCAGTGGATGAAGAGTTATTAGATGGTAGTATAGAAAGCAGGGGAGCTGACAATAGAGAATATGCAAGAGATAATAGTTCATTGATGGATATGGAAGGCACAGGCACAGTTGAAGTTCTTCAGAAGGGGGGGAAATTTTACAGAAAGAGAGAGAGAGTGAAAAATGTTGGAAACCATCAGCTTGATGATGGTGGGGAAGCATGTAGCGGTACTGAAGAAGGGCTATGTTTTAGTTCACTAAAGGAGATGGTTGATAGTGAGGTTACTAATGAAAAGCTTGAAAAAATCTCTCCAAAAGGCGGGGGGAAACGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCTGCCTTGAATGCGTTGCAAACTTTAGCAGATCTGTCTCTAATGATGCCAATATCTACAATAGATTCTGAATCATCCATCCAATTGAAGGGAGACAGAATTTCTGCTGATAAAGATAGTAAGTCTGCTTTACCTGAAGCAACATCAACAAGCCATAAGAGACATAAACTTAAACGCAGTGTAGTGCCTGAAATTGAGGTTTCAACCTCCAAAAAGTCCAAGCTTGGAAAGGAATCGGCAAAGGATACCAATGTGCTCTCTGAATCAAAAGAACAACTTCCTTTTGTTGATGCAACATGGAAAAGGAAGCGGAAGTCTATGGTTCCAAAGGTTGCAAATGCAAAGCTTGATACTTTTCCAAGTGGTCCCTTGAAAGATGAGGCTTTAGATGATGAGAAAAAACCAGTGGCTAAAGGAAAACATGGTGATCAGGTTTTTATCCTACCAAAGCAATTGAAGACAGTTAAATCATCAGAGAGTTCCTTGTTTAGTGATCAGAAAGATTTGACAGCATCAATGGCAGAAACTCCACTTTTGAACGAAGTTAGTTTACCAACTAAACGAAGTAGACGGAAGATGAATTTACCGAGAACTTCCTTTGCTAAAGAGAAGTCTTCTGATTACATATTGAAAAGTCAACCTAACAAGCACTCTGCGGTGAAGGAGAAGCTTTCTAGTTGCTTGTCATCTGATATAGTTCGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTGATGGAATACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGCGTTGAGTGGAGTGTTGTAAGAGGTTCCCTTGGCAAACCCCGGCGGCTTTCTGAACATTTTCTTCACGATGAAAGGCAAAAACTTGCAGAGTATCGAGAATCAGTGAGAAAGCATTATGCTGAACTGCGGACTGGTATTAGGGATGGACTTCCAACTGATTTAGCTAGACCATTATGTGTTGGACAGAGAGTAATTGCTGTTCATCCAAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACCGTTGATTATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAGTTAGGTGTTGAGTTTGTAATGGACATTGATTGTATGCCTTTCAATCCATTAGATAATATGCCAGAAGCTCTGAGGCATATTGATGACAGAAAAGGCTCGCCTATAGAGCCACATGTTAATGGAACTTCAAATTTTGGCGGCTGCGAAAATCATTCCTCACCGGTTAAGGCTATGGTTGCTACTGTCGATAACTTCTGTGCACAAGCAGGTTGTGTTCAACCATGTAAAGTTACACACCATCAAGCTAAGGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATCGAAAGGAGACATTGTTGATGGAGCTTCGAAGTTCAAATAGCGACATATTGGAAAACCAGAATGGCATAGAATGCGTAAACGATTCTGAGGTTTTCAAGAAACATTACGCCATGGTTTCTGATGCTATGTTACAACTGAGGCAGCGCAATACCTACAGAGGAAACTCTCTGCCACCATGGATGAAGCCGCAAACAAGTTTCAATGTTCATGACGATCTTCCCAATATGTTGGATAGCTCTCTTACACAAGAGTTAGGGTCAACTGTTGTTCAAATTATTAAAGGATCCAGATCAAGGTCACATGCAATGGTAGATGCAGCATTTAAGGCATTGTCTTTGACAAAGGAAGGTGAAGATGCTTTCGTGAAAATTGGGCAAGCATTGGATTCTATCAATCATCAACAGTTGGCCTCGAAGTCTAGGTTACCTCTGGTTAGGTCTCAAGAGCAAGTGACTGCAAATGGCAGTTTTTATAATCATAATCATTCAACTTGCAGTGTATCAGAGTCTATACTTAATGATCCATCTGGTGCAAAACTGCATAATTATTCGGACAAATTTGATACTGAACTTCCGTCGGATCTTATCACTTCATGTGTTGCTACATTAATCATGATTCAGACATGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCCGTTAGCAGCCTGCATCCATGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAAACACAGATTTTAGCACTCATCCCTACTTGA 3339 0.4082 MAPTRKSRSVSKRISNSSDVSPEKDGVNSNKNKHRKKKLTDKLGSQWSKEELEGFYEAYRMYGKDWKKVAGVVRNRTTEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESSDALGPRKFIKRKREKVQLSVSKDQSHSIASSEGCLSLLKKRRLDGIVPHAVGKRTPRVPVSYSYKKDYTENYVSPYRRSLKSTTDANDDEVAHVVALALTEAAQRGGSPQVSQSPRRRVEQKPSPVQRWEKKHQVSETTRAKLHNLSVDEELLDGSIESRGADNREYARDNSSLMDMEGTGTVEVLQKGGKFYRKRERVKNVGNHQLDDGGEACSGTEEGLCFSSLKEMVDSEVTNEKLEKISPKGGGKRNKKLFFGDETPALNALQTLADLSLMMPISTIDSESSIQLKGDRISADKDSKSALPEATSTSHKRHKLKRSVVPEIEVSTSKKSKLGKESAKDTNVLSESKEQLPFVDATWKRKRKSMVPKVANAKLDTFPSGPLKDEALDDEKKPVAKGKHGDQVFILPKQLKTVKSSESSLFSDQKDLTASMAETPLLNEVSLPTKRSRRKMNLPRTSFAKEKSSDYILKSQPNKHSAVKEKLSSCLSSDIVRRWFIFEWFYSAIDYPWFAKRELMEYLNHVGLGNIPRLTRVEWSVVRGSLGKPRRLSEHFLHDERQKLAEYRESVRKHYAELRTGIRDGLPTDLARPLCVGQRVIAVHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPFNPLDNMPEALRHIDDRKGSPIEPHVNGTSNFGGCENHSSPVKAMVATVDNFCAQAGCVQPCKVTHHQAKEADIHALSELKRALDRKETLLMELRSSNSDILENQNGIECVNDSEVFKKHYAMVSDAMLQLRQRNTYRGNSLPPWMKPQTSFNVHDDLPNMLDSSLTQELGSTVVQIIKGSRSRSHAMVDAAFKALSLTKEGEDAFVKIGQALDSINHQQLASKSRLPLVRSQEQVTANGSFYNHNHSTCSVSESILNDPSGAKLHNYSDKFDTELPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVSSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1846 1112 PANTHER LIN-9 1 1112 IPR010561 GO:0006351|GO:0017053
Pvu7g1846 1112 MobiDBLite consensus disorder prediction 1 25 - -
Pvu7g1846 1112 MobiDBLite consensus disorder prediction 1 42 - -
Pvu7g1846 1112 MobiDBLite consensus disorder prediction 228 263 - -
Pvu7g1846 1112 SMART sant 43 91 IPR001005 -
Pvu7g1846 1112 MobiDBLite consensus disorder prediction 416 471 - -
Pvu7g1846 1112 MobiDBLite consensus disorder prediction 455 470 - -
Pvu7g1846 1112 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Pvu7g1846 1112 Coils Coil 843 863 - -
Pvu7g1846 1112 Gene3D - 4 99 - -
Pvu7g1846 1112 SMART DIRP_2 627 728 IPR033471 -
Pvu7g1846 1112 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Pvu7g1846 1112 CDD SANT 47 81 IPR001005 -
Pvu7g1846 1112 Pfam DIRP 626 727 IPR033471 -
Pvu7g1846 1112 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1112 IPR028306 -
Pvu7g1846 1112 MobiDBLite consensus disorder prediction 230 245 - -
Pvu7g1846 1112 MobiDBLite consensus disorder prediction 246 263 - -
Pvu7g1846 1112 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1846 Pvu-Chr7 41641590 41654907 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu7g1846 DIRP 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1846 - - gmx:100816217 1818.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1846 7 41641590 41654907 Pvu7g1846 7 41641590 41654907 ECH