Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu7g1830 | ATGGCGACAGAAGAACCTACTCTTGTTGTGGAACCCGCACCCGAGCCTGCTGCCACCGAGTCTCCTCCGGAGGAGAAGGAGGAGCCGAAATCTGAAGCTAAGGCAAAGAAGTCCAAGGAACCTAAACCTAAGAAGGTTACCAGGCCCCGTAACCCTCCAACTCATCCTTCCTATGAAGAGATGATCAAAGACGCAATTACCTCGCTGAAGGAGAAAACTGGTTCCAGCCAATATGCTATTGCAAAGTTTGTCGAGGAGAAGCACAAGCAGCTTCCCTCAAACTTCAGGAAGCTTCTTCTCTACCACTTGAAGAAGCTTGTTGCTGCTGGAAAGCTGGTCAAAGTCAAAGGATCCTTCAAGCTTCCACCTACCAGGCCCACTGTTTCTTCCCCTGCCAAGAAGAAGAAGCCAGCACCTGCTAAGCCCAAGCCTAAGCCTAAGCCCAAGCCCGCTGCCAAGGCCAAGGATGTCAAGACTGCTAAGTCAAAGGCACCCGTTAAGGCAAAACCTGCTGCCAAGCCTAAGGCCAAGGCTCCAGCCAAACCCAAGCCCGCTGCAAAGCCCAAGGCTGCTCCCAAGCCTAAGGCTGCAGCTGCCAAGCCAAAGGCCACTAAGCCAGCAGCCAAGCCCAAGCCAGCTGCAGCCAAGCCCAAAGCTGCTAAGCCTGTGGCAAAGCCCAAGGCTAAGCCTGTGAAGGCTGCCAGGACTTCTACCAGGACTTCACCAGGGAAGAAAGCCCCTGCCGCAAAGCCCGCGCCGAAGAAAGTGGCGGCAGCTGCGAAGAAAACTCCAGTGAAGAGTGTGAAGCCAAAGAGTGTAAAGTCTCCGGCGAAAAAGACTCCTGCCAAAAGAGGGGGTAGGAAGTGA | 867 | 0.5421 | MATEEPTLVVEPAPEPAATESPPEEKEEPKSEAKAKKSKEPKPKKVTRPRNPPTHPSYEEMIKDAITSLKEKTGSSQYAIAKFVEEKHKQLPSNFRKLLLYHLKKLVAAGKLVKVKGSFKLPPTRPTVSSPAKKKKPAPAKPKPKPKPKPAAKAKDVKTAKSKAPVKAKPAAKPKAKAPAKPKPAAKPKAAPKPKAAAAKPKATKPAAKPKPAAAKPKAAKPVAKPKAKPVKAARTSTRTSPGKKAPAAKPAPKKVAAAAKKTPVKSVKPKSVKSPAKKTPAKRGGRK* | 289 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu7g1830 | 288 | CDD | H15 | 52 | 128 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pvu7g1830 | 288 | MobiDBLite | consensus disorder prediction | 149 | 163 | - | - | |
| Pvu7g1830 | 288 | MobiDBLite | consensus disorder prediction | 112 | 288 | - | - | |
| Pvu7g1830 | 288 | SUPERFAMILY | "Winged helix" DNA-binding domain | 51 | 135 | IPR036390 | - | |
| Pvu7g1830 | 288 | MobiDBLite | consensus disorder prediction | 168 | 182 | - | - | |
| Pvu7g1830 | 288 | SMART | h15plus2 | 52 | 118 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pvu7g1830 | 288 | MobiDBLite | consensus disorder prediction | 20 | 39 | - | - | |
| Pvu7g1830 | 288 | PRINTS | Histone H5 signature | 41 | 62 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pvu7g1830 | 288 | PRINTS | Histone H5 signature | 68 | 85 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pvu7g1830 | 288 | PRINTS | Histone H5 signature | 110 | 134 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pvu7g1830 | 288 | PRINTS | Histone H5 signature | 143 | 157 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pvu7g1830 | 288 | PRINTS | Histone H5 signature | 177 | 194 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pvu7g1830 | 288 | PRINTS | Histone H5 signature | 199 | 218 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Pvu7g1830 | 288 | PANTHER | HISTONE H1 | 2 | 288 | - | - | |
| Pvu7g1830 | 288 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 54 | 123 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Pvu7g1830 | 288 | MobiDBLite | consensus disorder prediction | 272 | 288 | - | - | |
| Pvu7g1830 | 288 | PANTHER | HISTONE H1.1 | 2 | 288 | - | - | |
| Pvu7g1830 | 288 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
| Pvu7g1830 | 288 | Gene3D | - | 50 | 130 | IPR036388 | - | |
| Pvu7g1830 | 288 | Pfam | linker histone H1 and H5 family | 55 | 121 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu7g1830 | Pvu-Chr7 | 41444566 | 41445998 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu7g1830 | 51 | 123 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 34.247 | 3.77e-08 | 51.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu7g1830 | K11275 | - | gmx:100775944 | 169.859 |