Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1828 ATGGAAGAGGTTGAGCAAGCTAATAGAACAGCTGTTGAAAGCTGTCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAGTGATGGAAACTGGGGATGCTGTGGTAAGGTTCAAGAAGGTTGTGTCCTTGCTTCACAGTGGTTTGGGTCATGCAAGAGTGAGGAAGCTTGAAAACCCTCAAGCCCCCTTTACACATCAAAGTATCTTCTTAGACAACCCAAATTGCAAAACCAACAACCATCACTCAAAAAATCTGCAGCTTTTCCAAGCCAGCTTTCCTGACAATTCACTTCAGGAAATGGGTTCAACCATTAAACATTCACTCTCTCTTGGACAGCCCTCTTTGGAATTGAGCTCTAGTGGGAAAAGTCCTCTTCACCTCACTCAACATGCTTCTTCAGCTCACTATCACTTCTTTCAGCAACAGCATCATCAAAGGGCGTTGCTCCAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAACAACAGCAACAGTTGAAGCATCAAGCGGAAATGATGTTCCGAAGGAGCAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCCAATAGGTCTTTTATTTCTTCCTTGAGCATAGACGGAAGTGTGGCTAACTTGGATGGAGGTGTCTTCCATTTAATAGGAGCTCCGCACTCATCTGATCAGAATTCGCAACAGCACAAGAGAAAATGTTCTGCAAGAGGTGATGAGGGAAGCTTGAAATGTGGGAGCAGTTCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGAGTGAAGAGGCCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCACCTGATGATTATTCATGGAGAAAGTATGGCCAAAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATACTACAAATGCAGCAGCATGAGAGGGTGTCCTGCTAGAAAGCATGTTGAGAGGTGTTTGGAAGAGCCGACCATGCTAATTGTCACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACGCAATCTGCAAATGCATGA 1077 0.4475 MEEVEQANRTAVESCHRVLSLLSQPRDQVQHRNLVMETGDAVVRFKKVVSLLHSGLGHARVRKLENPQAPFTHQSIFLDNPNCKTNNHHSKNLQLFQASFPDNSLQEMGSTIKHSLSLGQPSLELSSSGKSPLHLTQHASSAHYHFFQQQHHQRALLQQQQQQQQQQQQQQQQLKHQAEMMFRRSNSGINLNFDSTSCTPTMSSNRSFISSLSIDGSVANLDGGVFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSSRCHCSKKRKHRVKRPIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSANA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1828 358 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 357 - -
Pvu7g1828 358 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 357 IPR044810 GO:0003700
Pvu7g1828 358 SUPERFAMILY WRKY DNA-binding domain 288 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu7g1828 358 MobiDBLite consensus disorder prediction 232 252 - -
Pvu7g1828 358 Gene3D WRKY domain 277 352 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu7g1828 358 SMART WRKY_cls 290 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu7g1828 358 MobiDBLite consensus disorder prediction 158 178 - -
Pvu7g1828 358 Pfam WRKY DNA -binding domain 292 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu7g1828 358 Pfam Plant zinc cluster domain 243 288 IPR018872 -
Pvu7g1828 358 ProSiteProfiles WRKY domain profile. 285 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu7g1828 358 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1828 Pvu-Chr7 41387786 41390521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1828 1 355 WRKY Transcription Factor Family AT2G30590 58.747 3.93e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu7g1828 WRKY 5.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1828 - - pvu:PHAVU_007G177900g 674.855