Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1824 ATGACGATGAAGAGGCTGGTGAGAGTCAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAGGAGGCCACTGCCATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTAGAGAAAATGAGGCCAGATAACAGTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAATAAAAGAAAGCAGAAGGCACCGGTAGCTATCCCCTCAGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCTACACTGTCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCACTAGGCCTGCAGGGATCTAATTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGTCAAGATAGTTCATGCTCACCTGACGCTTCAAACAAGTCTGCAAAGAGTGCGGGACAGAGTTTGTCACCTTGTAAAAATAGTCAATCCATATGCAATAGAGGACCGCAGAATGGTGCTGAAACACAGGAAGCAAAATGGGATCTTTGGAAAACTTTAAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGTCTTTCAAGTCTAATGTGCAAGCGTCTAATGCTAAACCCGAATCCGTGAAAGTAACTGACAGTGATACTAAAGTGCTGAAAGCCAAAATTAAGGAAAATAAGCGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGATCATGCCTCTCTAGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTAATGACAGTAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGAAGCATACCGGTCTCATTTATCCAAAAATTATTAGTGAAGAAACTGGGCCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTACAGAATTTAGTTGAATTGTGGCTTGATACGGCATCTACAGGGCACAGAATTCCTGCAACCATAGGATCCTCAGGGAAAGACTTTGTGATGATCCTAACCTATGGTCGGAAGGTCCTACACCCTTGA 1290 0.4155 MTMKRLVRVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFNKRKQKAPVAIPSVLLPARRKERSLSSLVVSTPRVSTLSTMTGRRTKPTRKALGLQGSNFSVEKLIKKEEELLEDRQDSSCSPDASNKSAKSAGQSLSPCKNSQSICNRGPQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQASNAKPESVKVTDSDTKVLKAKIKENKRKAKVEDEKISTDHASLDTAKPNKLRRVRPKKEPVFGESRISPQAVLDANDSNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLVKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVLHP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1824 429 SUPERFAMILY RING/U-box 15 85 - -
Pvu7g1824 429 MobiDBLite consensus disorder prediction 167 202 - -
Pvu7g1824 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Pvu7g1824 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Pvu7g1824 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Pvu7g1824 429 SMART ring_2 20 60 IPR001841 -
Pvu7g1824 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 IPR044807 GO:0004842
Pvu7g1824 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 - -
Pvu7g1824 429 MobiDBLite consensus disorder prediction 162 202 - -
Pvu7g1824 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1824 Pvu-Chr7 41353310 41358499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1824 1 348 C3H Transcription Factor Family AT2G30580 47.578 2.31e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1824 K16277 - gmx:100778462 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1633 1 41544280 41551058 Pvu7g1824 7 41353310 41358499 PCT