Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1798 ATGTTCCCTTCAGTTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGGTGGACTCAATCACGTAGTTACAACAATCATTTCTCCCCAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCGGATGCTGAAGTGATTGCTCTATCACCGAAGACTCTTCTAGCTACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAAGCATACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCTCTCGGTGACCTCACAGGAATTAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACTCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAATTGGCTACAAACACCACAAACCCCTTAGTCCAATCCCTCTTCCTTTTCCCAACCCAACAACAACACACCAACAACAACAACACCAACTTCATCAATCACTGGGACCCAAACCCTAGCCCTAGCAACCTTCCCACCCTCCACAACACCATCAAACCCGAATCTCACAACTTCCACACCCACATCTTCAACAACAGCAACATCTCTTCTCCTTCATTGCTTCTTCATCATCCCCCCAAGACCATGATTACGTCACCCTACCGTGACCTCCACGTCCGCCCCTCCAACGCTGCCACGTCAGCGCACCTCTCCGCCACTGCGCTGCTCCAGAAGGCTGCAACCTTTGGCGCCGCCGCTATCACGGGTCCCAGTCACGTGACTCCTCTCAGCATGGCCGAGTTGGGAACCGTGTCGACTCAGCTCGACTCGGTGCCACCCGAACGGTACATCAACATAAGGGACCTCAAGAATAGCGACGGTCTCACCAGGGACTTTCTTGGCCTCACCAATAGCGACGCGGTTGACGTTAGCATCGACGTCAAGGACATGCTAACGTTCACGGGAGGGAGCGTAGAGTACAACCATTACCACCACCAACCCTCCTACGAGCACCATCACAATAGTAACTCGCTTTTCAAGCCACAGCATGGGTTTGGATTCCTCCGGACAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTGA 1335 0.4989 MFPSVMSNSNSLSEEATVSCGTRIGGLNHVVTTIISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATNTTNPLVQSLFLFPTQQQHTNNNNTNFINHWDPNPSPSNLPTLHNTIKPESHNFHTHIFNNSNISSPSLLLHHPPKTMITSPYRDLHVRPSNAATSAHLSATALLQKAATFGAAAITGPSHVTPLSMAELGTVSTQLDSVPPERYINIRDLKNSDGLTRDFLGLTNSDAVDVSIDVKDMLTFTGGSVEYNHYHHQPSYEHHHNSNSLFKPQHGFGFLRTTTGPESWGNCE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1798 444 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Pvu7g1798 444 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 413 - -
Pvu7g1798 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 413 - -
Pvu7g1798 444 Gene3D Classic Zinc Finger 52 121 - -
Pvu7g1798 444 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Pvu7g1798 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Pvu7g1798 444 Gene3D Classic Zinc Finger 142 207 - -
Pvu7g1798 444 SMART c2h2final6 149 169 IPR013087 -
Pvu7g1798 444 SMART c2h2final6 114 144 IPR013087 -
Pvu7g1798 444 SMART c2h2final6 73 95 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1798 Pvu-Chr7 40951214 40955016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1798 17 414 IDZ Gene Family AT4G02670 49.883 4.45e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g1798 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1798 K25870 - gmx:100780056 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1798 7 40951214 40955016 Pvu1g1606 1 41211931 41216156 PCT