Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1797 ATGGATTATATGTATCCAGTGAAAGAAGAATACTTGGAATCATCAGCACCATCATCATCATCATATCAATTAGGTAGTGAGTATCCACCAAAGCCAATTGAGGGACTTCGTGACACCGGACCACCACCATTCCTCACCAAAACTTTTGATGTTGTGGATGACCCAGTTACCAACCACGTAATTTCTTGGAGCAGAGACGGCACAAGCTTTGTGGTCTGGGATCCACATGCCTTCTCTGCAAGTCTCCTTCCCAGATACTTCAAGCACAACAATTTCTCCAGCTTTGTCAGGCAACTAAACACTTACGGTTTTAGGAAAATTGATCCGGATAGATGGCAGTTTGCAAATGAAGGATTCATCAGAGGGCAGAAGCAATTGTTAAGAAGCATAAGGAGAAGGAAGGCACCTTCCCAACTAACGCAAGGTCACCACTGTGTTGAAGTTGGACGTTTTGAAATAGACAAAGAGGTTGATCGTTTGAAGCATGACAAGATAGTGTTGATGATGGAGCTTATGAATCTAAGACAGCAGCAGCAGAAAGCCAGAATGTACATTAAGGAGATGGAGCAAAGGTTACAAGTGACAGAAATCAAGCAGAAACATATGATGGCATTCTTATCTAGAGCCATAAAAAATCCTGCCTTCCTACACCAACTCCAACAGAAGGAGAACAGAAAGGATCTTGAAGAAGCTTTGACCAAAAAGAGAAGGCAAATTGAGCAAGGAGCTAGAGGTATTGGAGAATCAAGTAGTGGGGGTGAAGAAAGGAGCAGAGTTAAAGTTGAGGCCTTAGAATTTGGGGATTGTGATTGTGATCTTGGAGTGTCAGAGTTGGAAATGTTAGCTATGGAAATGCAGGGGTTTGGACAGGGTAGGATAGACCGGGAGGTAGAACCTGAGGCACTAGAATCACAAGAGAGACTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTACTGATCAGTGAGAAATTTGAGGGTCGATTAGACATTCCAACTACTGAAGATAATGATGAAGATGTTGTCAATATATTGGCGAATGAACTTGGTTGCTTGTATTCAAGTCATTAA 1074 0.4218 MDYMYPVKEEYLESSAPSSSSYQLGSEYPPKPIEGLRDTGPPPFLTKTFDVVDDPVTNHVISWSRDGTSFVVWDPHAFSASLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWQFANEGFIRGQKQLLRSIRRRKAPSQLTQGHHCVEVGRFEIDKEVDRLKHDKIVLMMELMNLRQQQQKARMYIKEMEQRLQVTEIKQKHMMAFLSRAIKNPAFLHQLQQKENRKDLEEALTKKRRQIEQGARGIGESSSGGEERSRVKVEALEFGDCDCDLGVSELEMLAMEMQGFGQGRIDREVEPEALESQERLDRVLDEEFWEELLISEKFEGRLDIPTTEDNDEDVVNILANELGCLYSSH* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1797 357 MobiDBLite consensus disorder prediction 16 37 - -
Pvu7g1797 357 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Pvu7g1797 357 Coils Coil 218 238 - -
Pvu7g1797 357 Gene3D - 37 134 IPR036388 -
Pvu7g1797 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 345 IPR027725 -
Pvu7g1797 357 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g1797 357 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g1797 357 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g1797 357 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g1797 357 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g1797 357 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu7g1797 357 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 18 345 - -
Pvu7g1797 357 Coils Coil 171 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1797 Pvu-Chr7 40921790 40924438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1797 17 356 HSF AT3G22830 46.174 2.68e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu7g1797 HSF_DNA-bind 4.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1797 K09419 - gmx:100811945 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1605 1 41183051 41185997 Pvu7g1797 7 40921790 40924438 PCT