Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1778 ATGAGAGAGGGGCTGAGATCGCGGGCGCGATTGGGGACGGTTTCTGGAGGCGAAGGAGTTGTTCACAAGAAAAAGGTCGTTGTGAAGAGCGAGGCTGTTGACTTGGATGGCGAGGGTTTGGAGGTGCAGAACTCAACGATTGAGAAGAAGGGTGAAGCTGCACGTGATGTTAAAGAAGAATGTGGCTTTGATTTGAATGTGAGTGCGAGTGGAGAGGTTGACTTGGAAGAGAATGGGAGTGGTAGGGGTTGTTTTAGTGGTGTGGGTGGTACTGTAGTAGCTGAGGTAGATAGGAAGACAAAGAAGGAGCAAGGTTCGAATAATGAAGTACGGGTTGGGGGTCGCGTGTTGCGCTCAAGGTCTAATGGGGGGAAGGATAAAAGAGTGTACTATGGAGAGAATGAAGATGTTGTTTCTGAGAGTGATAGAGAATGCAGTGGGTTTGAGAGGGGGAAAGTTAAGGCGGAATGTGAAGAAGCTGATGAATTTTTGGCTGACAGTTCTGAGAATGAAAAGGCTATGGTGAAGAAGGAAGAGAATGGCACGACGAATTTGAAACGGAAGCGTGGGAGGCCTCCCAAAATAAATTTGAAAGTGGAAGATCAATTAGTGGATCATCAATTAGTTGATCAGTTGCCACGTAAGCGTGGAAGACCCCCTCTGGCCGGCAAACAAAACCATGTGGATGTGCATAATAGAAAAGAAAAGACTGCCCTTCGAAAAGATAAAAAGGGTTTAACTATGAGACATGATGCTAATGTGAATGCAATGGATGATACAAATTCAAGGAAATCTGCTGGGGATGAGCTAGAAAAGAAGGAAGTCACTTCTGGCAAGAAGTCTAAATTTAGTAAGGCTTCGGAAACTGACAACAATTTGGTGGCCTCACCATTAAGATCAAATACTGAGAATGAAAAAAGTGGAAAAAATAGAGTAAAGCAGTTAGTGAGGGAGCAAATAAAGGAAATTCTCTCAGCTGCAGGCTGGACAGTTGACTATAGACCTAGGAATGGTAGAGAGTACCATGATGCAGTGTATGTTAGTCTGGACGGACACACACACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCAGGCTTCAAATTTACACCAATACCAGCACAGGATTTCAAAATACTCACAAAGGTAATTAACAAGCAAAGAACAAAGAAAGATAAATCTGTAGAGAAAGGGGGAAAGGGTGGAAATAAAGTTGATGGAGTCAGTGGTAACAAAAACAAAGAAAAGTCAGTGAAGAGGAAAATGAAAAGGAAGCGGTCACTTGGAGACACAGATGCTATATCACCTAACAGGATGCCAGTTCGTGTGAGGGATCATAAGCGACACAAAACACAAAATAAGCTGCGAAGTGGTCCATTGGTTCGTAATGCTGAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACAGTGGAAAAAGAACTTTGCTTGCTTGGATGATTGATTTGGGCACAGTCCTTCTAAATGGGAAGGTTTATTATAAGGCACCTGAAGATAAAAGTGAAGTACTGGATGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGTGATAAAATCATTACAATTTCAGAATTTGAAGTTCACGCAGGAAGAAAATTCGCTGATCCCCTTCAAAATATATATGTGGAGGAAGGAAAGTCTCTTTTAGAGTGTTTGCTAGATTCGTGGAATAAGCAAGATGAATCTGAACGTCATGGTTTTCATTTTGTTGATGTTGCGGGTGAAGATCCGAATGATGATACTTGTGGGGTCTGTGGAGATGGTGGAGACCTGATATGTTGTGATGGTTGCCCATCAACATTCCATCAAGACTGCTTGGATATAGAAAAGTTTCCATCTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAATGGATGTTCAGACCAAAAGGATGGTGATAATGATCTTACTATGTCAAAATTACTCACGTGCCGACTATGTGAGCAAAAATGTCACAGATCCTGCATTGAGGCAAATGATTGCAACACTATTGATTCCAGTGATGTGTTCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGAGACTTGAAATGCTCCTAGGGGTTAAACATGAAATTGAAGATGGATATTCATGGACTTTTATTCGGCGGTCAGATGTTGGGATTGATGCTTCTGAGATAAAACCTCAGATGGTTGAATGTAATTCTAAGCTTGCTGTTGCATTATCGATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGGTCAATCTGATCCACAGTATTCTCTATAACCGTGGGTCAAATTTCAGTCGTCTGAGTTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGGGATGAGATAATTTCTGCTGCATCTATCAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTATTGGAACCCGCTATATGTACAGGCGACAAGGAATGTGCCGCAGGCTTCTAAATGCCATTGAATTGGGACTCGGCTCTTTAAATGTTGAGTTATTGGTGATACCAGCTATCTCAGAACTCAGAGAAACTTGGACTTCCATTTTTGGGTTTGAGCCACTTGAATCAACAATCAAGCAAACAATACATAATATGAATCTATTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATATCAGAACATGAATTGGCTGGTCATAAACCGATTCCTTCAGACGCTTTCAATCTTCAAACCAATCAAATAGTAAATAATTGCAATGGAGCGGGCTCATCTGGATCTGATTTGATCAATCATATAGAGATTCCTCCCCGCCCTAATACATGCCAGATAGAGGATGAAACCATATCGACTGAATCTGATTGTCATCTTCCTGAGGGTTCACTGAATAATGTACCTGACATTGCTAGCAACATTAATGATTATAGACAATCTTCAAAAGGTGACACATGTCAAGTTGTTCGTCAGACAGGTGATGAGAATCCGGTCATGGACAACAGTATTAAAAATGCCTGTGAATATGTGACTGATACTTGTTGCCTAGCTGGAGATAGCCAGTTGAACAATTGCGCGGTTCCTTATGAGGAAAGACTGTGTCTCACATCTCGTATTAACACTGAGGCTACAGAAGGACAGTGTGTTAGTGTTTCGTTGGAGGTTACTGAAAACTTTCCAAATCGTGTCGAAGTATCAAATGAAGTTATATCAAATAACATAAGTGTCGAAGACTCGGAACCCTGTGGTGCAGGAAGTATTACAAGAGATTCAAAAGTTTGTGCTGACTCTATTCACCAGGATTCATGTATAATTTCCGACAGTTGTGAACTGAGAAGCGACACGGACTGTGGTCAACCGAACTTCATGGGAACAGAAGAAAAACATAGTGAATTTATTAGTGTTTGTGGTTCTGATTCTAGAGCTAATGGTGATTGTGCCTCTGGTGAAGGTGCTTCCGCCACTAACGTGTTATTGCACCGTACATCACAGGACATGACCAATAACAAGCCTTGGGTGAAAGGGTCTTCAGAGGTATCTGAGCCTGATTTGCAGGTGGATGAAACTGAACGGAACAGTGGTCCCTCCCCGTGGAGCCCTAACACGGCTTCTGGTTGTGCATCTACAGGCAGTGCTTCTCGTGGTAGCGAGGGGATATTTTTGTCAAACCAAGCCAGTTGA 3717 0.4208 MREGLRSRARLGTVSGGEGVVHKKKVVVKSEAVDLDGEGLEVQNSTIEKKGEAARDVKEECGFDLNVSASGEVDLEENGSGRGCFSGVGGTVVAEVDRKTKKEQGSNNEVRVGGRVLRSRSNGGKDKRVYYGENEDVVSESDRECSGFERGKVKAECEEADEFLADSSENEKAMVKKEENGTTNLKRKRGRPPKINLKVEDQLVDHQLVDQLPRKRGRPPLAGKQNHVDVHNRKEKTALRKDKKGLTMRHDANVNAMDDTNSRKSAGDELEKKEVTSGKKSKFSKASETDNNLVASPLRSNTENEKSGKNRVKQLVREQIKEILSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIPAQDFKILTKVINKQRTKKDKSVEKGGKGGNKVDGVSGNKNKEKSVKRKMKRKRSLGDTDAISPNRMPVRVRDHKRHKTQNKLRSGPLVRNAEEIDSETEGYVLYSGKRTLLAWMIDLGTVLLNGKVYYKAPEDKSEVLDGKITGDGIHCGCCDKIITISEFEVHAGRKFADPLQNIYVEEGKSLLECLLDSWNKQDESERHGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQDCLDIEKFPSGDWHCIYCCCKFCGSVNGCSDQKDGDNDLTMSKLLTCRLCEQKCHRSCIEANDCNTIDSSDVFFCGNRCQELSERLEMLLGVKHEIEDGYSWTFIRRSDVGIDASEIKPQMVECNSKLAVALSIMDECFMPYIDHRSGVNLIHSILYNRGSNFSRLSYSGFVTAILERGDEIISAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIELGLGSLNVELLVIPAISELRETWTSIFGFEPLESTIKQTIHNMNLLVFPHVDMLQKKISEHELAGHKPIPSDAFNLQTNQIVNNCNGAGSSGSDLINHIEIPPRPNTCQIEDETISTESDCHLPEGSLNNVPDIASNINDYRQSSKGDTCQVVRQTGDENPVMDNSIKNACEYVTDTCCLAGDSQLNNCAVPYEERLCLTSRINTEATEGQCVSVSLEVTENFPNRVEVSNEVISNNISVEDSEPCGAGSITRDSKVCADSIHQDSCIISDSCELRSDTDCGQPNFMGTEEKHSEFISVCGSDSRANGDCASGEGASATNVLLHRTSQDMTNNKPWVKGSSEVSEPDLQVDETERNSGPSPWSPNTASGCASTGSASRGSEGIFLSNQAS* 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 262 286 - -
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 210 310 - -
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 227 249 - -
Pvu7g1778 1238 Pfam Tify domain binding domain 528 577 IPR032308 -
Pvu7g1778 1238 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 221 1192 - -
Pvu7g1778 1238 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 739 906 IPR000182 GO:0016407
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 403 452 - -
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 1174 1238 - -
Pvu7g1778 1238 SUPERFAMILY FYVE/PHD zinc finger 595 647 IPR011011 -
Pvu7g1778 1238 SMART AT_hook_2 213 225 IPR017956 GO:0003677
Pvu7g1778 1238 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 171 195 - -
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 287 303 - -
Pvu7g1778 1238 PANTHER PHD FINGER PROTEIN 12 221 1192 IPR042163 GO:0003714|GO:0045892
Pvu7g1778 1238 SMART PHD_3 647 707 IPR001965 -
Pvu7g1778 1238 SMART PHD_3 605 646 IPR001965 -
Pvu7g1778 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 663 IPR013083 -
Pvu7g1778 1238 CDD PHD1_AIRE 606 645 - -
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 1201 1238 - -
Pvu7g1778 1238 MobiDBLite consensus disorder prediction 171 186 - -
Pvu7g1778 1238 ProSiteProfiles Zinc finger PHD-type profile. 603 648 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1778 Pvu-Chr7 40607300 40615468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1778 120 912 PHD Transcription Factor Family AT5G36670 38.698 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1778 - - gmx:100784172 1623.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1778 7 40607300 40615468 Pvu7g1778 7 40607300 40615468 ECH
Pvu1g1587 1 40882561 40888574 Pvu7g1778 7 40607300 40615468 PCT