Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1707 ATGAGTGCTTATCCCAATCAAAAACAGAGAACATGCGACTATTGTGGGGACTTCAAAGCTCTTCTATATTGCAGAGCTGATTCTGCAAAATTATGTTTCTTATGTGACCGCAAAATTCACTTCCCTAACCAACTTTTTTCCAAGCACTCGCGCACTCACCTCTGTGATGGGTGTGGTGATTCCCCTGCATCAGTCCTCTGTTATGCTGAGAACTCTGTTTTCTGCCACAACTGTGACTGCCAAAGCCATAACAACCGCATGCTGTCTCAGGAACACCAACGGAGACCCCTTGAGGGGTTCTCTGGGTGCCCTTCTGTGACTCAGATGTTAATGATTTTGGGTCTTCCTGAAAAATCTCTGCTTTCAACCGAGGGGGAAAGTTCCCATGATGATGGCCTTTCCGAATTGCACGTGTGGAATTCTCCTTCTGTTTTTGGTTTTGAGGATTTGATTGCTTCCTCTTCTTATAAGAATCATAAGGGTGCGTGCGGGAGACAGAAAGAAGAAATTCTGAGTCAGCTTCGTGAACTAATAAAGTTGGAGCCTGACTTAACTCATGGAGAAGTAGATGCTGAACCACAACTGCAATTTGAAAACTTGTCTACTGGTTTTGAACGTGACATAGAGGCTAACATGTTTCCTTCATATGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCGTGCAAATCAAATTGTTCCTTCTGATACGTCAGTGAGTGATTATAGCGAGCTAGCTTCAGCTAAAGATCCAACTTTTACAATCCCTGCAACTCACACGTATTGTAACAACCAAGGAAAACCATCAAATTATTTGAAGGCTGAAAACCTGTCTCCTACTCCTAAAGCTACTCCTTATGAGTTAACAAGTCATGAAAGAGATTCAGCATTATTGCGTTACAGAGAGAAGAAGAAAACAAGAAGGTATGACAAGCACATCAGATACGAATCACGAAAAGTTCGGGCAGAAAGCAGGATGAGAGTTAAGGGTCGGTTTGTGAAAGATGAGACACAGAAATAA 1026 0.4269 MSAYPNQKQRTCDYCGDFKALLYCRADSAKLCFLCDRKIHFPNQLFSKHSRTHLCDGCGDSPASVLCYAENSVFCHNCDCQSHNNRMLSQEHQRRPLEGFSGCPSVTQMLMILGLPEKSLLSTEGESSHDDGLSELHVWNSPSVFGFEDLIASSSYKNHKGACGRQKEEILSQLRELIKLEPDLTHGEVDAEPQLQFENLSTGFERDIEANMFPSYEAGVFCWHGESSDRANQIVPSDTSVSDYSELASAKDPTFTIPATHTYCNNQGKPSNYLKAENLSPTPKATPYELTSHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRVKGRFVKDETQK* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1707 341 SMART bboxneu5 7 54 IPR000315 GO:0008270
Pvu7g1707 341 SMART bboxneu5 55 97 IPR000315 GO:0008270
Pvu7g1707 341 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 338 - -
Pvu7g1707 341 CDD Bbox1_BBX-like 12 54 - -
Pvu7g1707 341 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 7 338 - -
Pvu7g1707 341 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Pvu7g1707 341 CDD Bbox1_BBX-like 54 97 - -
Pvu7g1707 341 Pfam CCT motif 295 337 IPR010402 GO:0005515
Pvu7g1707 341 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515
Pvu7g1707 341 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1707 Pvu-Chr7 39755224 39758207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1707 6 310 C2C2-CO-like Transcription Factor Family AT2G47890 35.625 5.96e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu7g1707 CCT 2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1707 - - gmx:100798117 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1707 7 39755224 39758207 Pvu7g1707 7 39755224 39758207 ECH
Pvu1g2103 1 46842991 46847282 Pvu7g1707 7 39755224 39758207 PCT