Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1683 ATGGATCGGAACAAACCCAATAGTGAACTTCATTTTGTCCACTATATAATCCCACAACTTCAGTTTTCGATTAGGGTTTTTTTGCTGTGGTTGCTTCTCATCCTCCATAACCTCCGAAGCTGTGCACCGAAGAACGAAGCCATGGGGAAGACACGTGGAATGGGAGCTGCTCGCAAGCTCAAGTCCCATCGCAGGAGGCAAAGGTGGGCTGATAAGTCATACAAGAAATCCCATCTTGGGAATGAATGGAAGAAACCCTTTGCTGGTTCTTCCCACGCAAAGGGAATTGTTCTCGAAAAGATAGGTATTGAGGCTAAACAGCCCAACTCCGCTATTCGAAAGTGTGCCAGGGTTCAACTCATAAAAAATGGGAAGAAGATTGCTGCTTTTGTCCCAAATGATGGATGCTTGAACTACATTGAAGAGAATGACGAAGTTTTGATTGCTGGATTTGGACGAAAGGGCCATGCTGTGGGTGATATTCCTGGTGTCAGGTTTAAGGTTGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 570 0.4526 MDRNKPNSELHFVHYIIPQLQFSIRVFLLWLLLILHNLRSCAPKNEAMGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1683 189 TIGRFAM uS12_E_A: ribosomal protein uS12 53 188 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pvu7g1683 189 Pfam Ribosomal protein S12/S23 78 188 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pvu7g1683 189 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 39 189 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pvu7g1683 189 PANTHER BNACNNG03140D PROTEIN 39 189 - -
Pvu7g1683 189 Gene3D - 72 189 IPR012340 -
Pvu7g1683 189 CDD Ribosomal_S23 73 186 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pvu7g1683 189 ProSitePatterns Ribosomal protein S12 signature. 106 113 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pvu7g1683 189 SUPERFAMILY Nucleic acid-binding proteins 67 187 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1683 Pvu-Chr7 39311481 39313177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1683 48 189 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.775 2.65e-95 271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1683 7 39311481 39313177 Pvu7g1683 7 39311481 39313177 ECH
Pvu7g1683 7 39311481 39313177 Pvu1g1812 1 43819915 43821716 ECH
Pvu1g1813 1 43824432 43826282 Pvu7g1683 7 39311481 39313177 ECH
Pvu1g1813 1 43824432 43826282 Pvu7g1683 7 39311481 39313177 PCT