Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1677 ATGGCCGATGCTCCCGCGAGTCCAGGCGGCGGAGGTAGCCACGAGAGCGGCGAGCACAGTCCCCGCTCCAATTTCCGCGAGCAGGACCGCTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCCGCCAACGGCAAAATCGCCAAGGACGCCAAGGAAACCGTGCAAGAATGTGTATCCGAGTTCATCAGCTTCATCACCAGCGAAGCTAGCGATAAGTGCCAGAGAGAGAAGAGAAAGACCATTAACGGCGACGATTTACTTTGGGCTATGGCCACTTTAGGTTTCGAGGAGTATGTTGATCCGCTTAAGATTTACCTCGCCTCTTACAGAGAGATTGAGGGTGATTCAAAGGGTTCGGCCAAGGGTGGAGAGACATCTTCTAAGAGAGATGTTTATCCCAATCCTAATGTCCAGCTTGCCCATCAAGGTTCTTTCTCACAAGGTGTTAACTACACGAATTCTCAGCCCCAGGGTCCACATATGATAGTTCCGATGCAAGGCCAAGAGTAG 525 0.5238 MADAPASPGGGGSHESGEHSPRSNFREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYVDPLKIYLASYREIEGDSKGSAKGGETSSKRDVYPNPNVQLAHQGSFSQGVNYTNSQPQGPHMIVPMQGQE* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1677 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Pvu7g1677 174 Gene3D Histone, subunit A 18 148 IPR009072 GO:0046982
Pvu7g1677 174 MobiDBLite consensus disorder prediction 119 174 - -
Pvu7g1677 174 MobiDBLite consensus disorder prediction 134 166 - -
Pvu7g1677 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 159 - -
Pvu7g1677 174 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu7g1677 174 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pvu7g1677 174 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pvu7g1677 174 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pvu7g1677 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu7g1677 174 MobiDBLite consensus disorder prediction 1 28 - -
Pvu7g1677 174 SUPERFAMILY Histone-fold 28 131 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1677 Pvu-Chr7 39251681 39254705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1677 1 174 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.111 4.87e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu7g1677 CBFD_NFYB_HMF 8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1677 K08065 - gmx:100798667 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1677 7 39251681 39254705 Pvu7g1677 7 39251681 39254705 ECH
Pvu6g0807 6 19594514 19596982 Pvu7g1677 7 39251681 39254705 ECH
Pvu8g2566 8 56264486 56266809 Pvu7g1677 7 39251681 39254705 ECH
Pvu1g1809 1 43764167 43765581 Pvu7g1677 7 39251681 39254705 PCT