Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1675 ATGGCCGCAGCTGCCCGCCCCCTCGTCACCGTCCAGTCCCTCGAGGGTGACATGGCAACCGACGCCGCCGCCACCGTCCCCATTCCCGATGTCATGAAGACTTCCATCCGCCCCGACATCGTCAACTTCGTCCACTCCAACATTTCCAAGAACAGCCGTCAGCCCTACGCCGTCAGCCGCCGCGCCGGACACCAGACATCCGCCGAGTCCTGGGGAACAGGTCGCGCCGTCTCCCGTATCCCTCGTGTGCCCGGTGGAGGAACTCACCGCGCCGGACAGGGAGCCTTCGGCAACATGTGCCGTGGTGGACGCATGTTTGCCCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGATACGCTGTCGTCTCTGCCATCGCCGCCTCCGCTGTCCCATCCCTCGTCCTTGCTCGTGGCCACCGCATCGAGACCGTCCCCGAACTCCCCCTCGTCGTCAGTGACTCTGCTGAAGGCGTCGAGAAAACTAAGGAAGCAATCAAAGTCCTGAAACAGATCGGTGCTTTCGCTGACGCTGAGAAAGCAAAAGACAGCCGCGGCATTCGCCCTGGTAAGGGAAAAATGCGCAACCGCCGCTACATCTCTCGAAGGGGTCCACTCATCGTGTACGGAACAGAAGGAGCTAAAGCTGTTAAAGCTTTCCGTAACGTCCCTGGTGTTGAGGTCGCCAATGTTGAGAGACTCAACCTTCTTAAGCTCGCTCCCGGTGGTCACCTTGGGCGGTTTGTGATTTGGACTAAGTCTGCTTTTGAGAAATTGGACTCCATTTATGGCTCGTTTGATAAGCCCAGTGAGAAGAAGAAGGGTTACGTGCTTCCCAGGTCCAAGATGGTCAACTCAGACATCTCCAGAATTATTAATTCTGATGAGGTTCAGTCCGTCGTAAGACCCACCAAGAAGGACGTGACTCGGGCTACTCTCAAGAAGAACCCTCTTAAGAATCTCAATGTCATGCTCAAGCTCAATCCCTATGCCAAGACTGCTAAGAGGATGGCTTTGCTTGCCGAGGCCCAGCGTGTTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTATCTAAGGAGGAGGCTTCTACAATTAGAGCTGCAGGAAAGGCATGGTATCACACCATGGTCTCAGATTCTGATTATACAGAATTCGATAACTTTTCTAAGTGGTTGGGTGTTTCACAGTAA 1218 0.5501 MAAAARPLVTVQSLEGDMATDAAATVPIPDVMKTSIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIETVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFADAEKAKDSRGIRPGKGKMRNRRYISRRGPLIVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRSKMVNSDISRIINSDEVQSVVRPTKKDVTRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKTVSKEEASTIRAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1675 405 Coils Coil 342 369 - -
Pvu7g1675 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Pvu7g1675 405 SUPERFAMILY Ribosomal protein L4 10 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pvu7g1675 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
Pvu7g1675 405 MobiDBLite consensus disorder prediction 54 94 - -
Pvu7g1675 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Pvu7g1675 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pvu7g1675 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
Pvu7g1675 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Pvu7g1675 405 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1675 Pvu-Chr7 39229824 39232224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1675 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.921 0.0 688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1675 7 39229824 39232224 Pvu7g1675 7 39229824 39232224 ECH
Pvu1g1806 1 43708846 43710593 Pvu7g1675 7 39229824 39232224 PCT