Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1658 ATGGAAGAAACATCAACATCTACAATCATGGCTGCACTCTCCACCCTCACCCCTTCCCAATTCTCAGATCTCACCCACTCCATTCTCTCCGCAACCCTCTACCACCATCGCCGCCTCGCCTCCCTCCTTTCTTCTCCAACGCTCTTCTCTCTAACCCTCCACCACCTCCACTCCCTCTCCCTCCCCCAGAAGACCCTCCTCATCGCCCGTCACCTCCTCTCCTCCCTCCACCTCCTCACTGCCACCTCCCCGCCGCCTTCCACAGCCACGAGGCAGCGCGACCTCGACGCTGCGCTCCTCCTCCTCTTCCTCTGCGAAACGCACAACCACAACCCACATGCCCTCGAGGCACCCTTTTCCCAATGGAGGATCAACCTCAGAACCATCTTCTCCGATTCATTGTTGACTCTTTCCTCTGCACCCTTTGGGGCATGCACGGGCTCCACGGTGCTAATTCCCTTTGTTGAGACCGTGGCGCGGTGCTGGAGACTCGTCGGCGCACTTGACTGCGGCGGAGGAAAGGAATCGGGGGAGGTGGCGGCGTCAGCTACGGCGGTGGTGGCGCTGCCATCGGTGGAGGTGAGGGCCGGTGGGACAGAGTGTGTGATATGCAGAGAGGAGATGGGAATAGGGAGAGACGTATGCGAGTTGCCATGTCAGCACTTGTTTCACTGGATGTGTATCTTACCGTGGCTGGGGAAGAGGAACACGTGCCCTTGCTGCAGGTTTCGGTTACCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTGTGGGAAGTGTTAGTTAAAACCGGTGCCAAAGATTCGTAG 810 0.584 MEETSTSTIMAALSTLTPSQFSDLTHSILSATLYHHRRLASLLSSPTLFSLTLHHLHSLSLPQKTLLIARHLLSSLHLLTATSPPPSTATRQRDLDAALLLLFLCETHNHNPHALEAPFSQWRINLRTIFSDSLLTLSSAPFGACTGSTVLIPFVETVARCWRLVGALDCGGGKESGEVAASATAVVALPSVEVRAGGTECVICREEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKTGAKDS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1658 269 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Pvu7g1658 269 Pfam Ring finger domain 200 242 IPR001841 -
Pvu7g1658 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 266 - -
Pvu7g1658 269 SUPERFAMILY RING/U-box 197 247 - -
Pvu7g1658 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 4 266 - -
Pvu7g1658 269 SMART ring_2 201 241 IPR001841 -
Pvu7g1658 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 248 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1658 Pvu-Chr7 38949129 38950575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1658 1 265 C3H Transcription Factor Family AT5G02750 51.786 4.71e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1658 - - pvu:PHAVU_007G161400g 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1658 7 38949129 38950575 Pvu7g1658 7 38949129 38950575 ECH