Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1645 ATGGGTAACGCCCATGGACACCGCCATCGCAAACACCCTAACTCCGTTCCTCCGCCCCATAAATACGATCATCCTCCACCATTCCCAACCCCACCACCACCCATAGCCAATTCCAGCATGCTCTCTCTCCCCTACACCCACGTCGACACAACCCTCCGCGCCCTCGCCGCCCAAGCCGAGGGCTTCGGCCGCTTCGCCGTCGGTGGCTTACATGGTCCCCTTCACCGCGTCACATCGCTCGCAGATGATGGACCGGGGTCGCTGCGTGAGGCGTGTCGCGGAAAAGAACCGTTGTGGATTGTGTTTGAGGTTTCCGGCACCATTCATCTCTCCTCGTACCTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATTAAACTCACCGGAAAAGGGTTGCGCCTGAAGGAATGCGAACACGTCATAATCTGCAATCTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGACGCCATTCAGATCAAACCTAATTCCAAACACATATGGATTGATCGTTGCACGCTCGCTGATTATGATGACGGGCTCATAGACATCACACGAGAAAGCACAGACATTACTATCTCAAGGTGTCACTTCCTTCAGCATGATAAAACCATACTTATTGGGGCTGATCCATCGCATATTGACGATAGGTGCATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACGCGACAGAGGCACCCTCGTGTTAGGTTTGCGAAAGTTCATCTCTACAATAATTATATCAGAAACTGGGGCATATATGCTGCGTGTGCTGGTGTGGAAGCCCAGATATTCTCGCAGCATAATATCTATGAAGCGGGACAGAAGAAGGTGGCGTTTAAGTACCTTACTGAGAAGGCAGCAGACAAGGAAGTGGGAACAAGCGGCATCATTAGGTCTGAGGGAGACTTGTTCTTAAATGGTGCTGAACCAGGGTTAATGGCTGAGAACGGAGGCTGCAAAATGTTTCACCCCAGTGAACACTATCCCTCATGGACAGTGGAAGCCCCTACAGACGATCTAAAACATATTCTTCATCACTGCACTGGATGGCAATCTGTTGCTAGGCCAGCAGATAAAGCACTATGA 1107 0.5095 MGNAHGHRHRKHPNSVPPPHKYDHPPPFPTPPPPIANSSMLSLPYTHVDTTLRALAAQAEGFGRFAVGGLHGPLHRVTSLADDGPGSLREACRGKEPLWIVFEVSGTIHLSSYLNVSSHKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLADYDDGLIDITRESTDITISRCHFLQHDKTILIGADPSHIDDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAACAGVEAQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGTSGIIRSEGDLFLNGAEPGLMAENGGCKMFHPSEHYPSWTVEAPTDDLKHILHHCTGWQSVARPADKAL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1645 368 MobiDBLite consensus disorder prediction 1 35 - -
Pvu7g1645 368 Gene3D - 44 350 IPR012334 -
Pvu7g1645 368 PANTHER PECTATE LYASE 18-RELATED 37 363 IPR045032 GO:0030570
Pvu7g1645 368 SMART amb_all 70 283 IPR002022 -
Pvu7g1645 368 Pfam Pectate lyase 113 276 IPR002022 -
Pvu7g1645 368 MobiDBLite consensus disorder prediction 1 15 - -
Pvu7g1645 368 SUPERFAMILY Pectin lyase-like 58 360 IPR011050 -
Pvu7g1645 368 PANTHER PECTATE LYASE 37 363 - -
Pvu7g1645 368 MobiDBLite consensus disorder prediction 19 35 - -
Pvu7g1645 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Pvu7g1645 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Pvu7g1645 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1645 Pvu-Chr7 38715140 38717984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1645 80 365 Polysaccharide Lyase AT3G55140 75.524 2.13e-169 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1645 K01728 - gmx:100814368 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1645 7 38715140 38717984 Pvu7g1645 7 38715140 38717984 ECH