Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g1634 ATGGTAGCTATTCTGAAGAGACAGAGAGAAGCGGAATCAGAAGAGATTAAGGATTTGGCCAAGAGTTTTTCGCCTCACGAGTTCCAGTGTAAGACGTGTAACCGCAAATTCTCGTCGTTCCAAGCGCTGGGAGGCCACCTGGCCAGCCACAAGAAGCCCAAGCTCGACGGAGAAGAGGCAAAGGATCTGAGTCTGGGCCGGAAGCCCAAAGCGCACGAGTGTTCGATTTGCGGGCAGGAATTCTCCTTGGGCCAGGCCCTGGGAGGGCACATGAGAAAACATAAGGGTAGCATGAACGGAGGGCTTTCTTCTTCTGTTATTCCCAAAGCACCGCTTCTGAAACGTTCCAATAGCAGCAAGAGGGTGATGTGCTTGGAGTTGGATCTCAACCTCACGCCGTTGGAAAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCCACGGTGCATCTTTCGTTGTAG 462 0.5173 MVAILKRQREAESEEIKDLAKSFSPHEFQCKTCNRKFSSFQALGGHLASHKKPKLDGEEAKDLSLGRKPKAHECSICGQEFSLGQALGGHMRKHKGSMNGGLSSSVIPKAPLLKRSNSSKRVMCLELDLNLTPLENDLKLLFGNKAPTVHLSL* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g1634 153 Gene3D Classic Zinc Finger 12 67 - -
Pvu7g1634 153 Gene3D Classic Zinc Finger 68 123 - -
Pvu7g1634 153 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 147 - -
Pvu7g1634 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Pvu7g1634 153 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Pvu7g1634 153 SMART c2h2final6 72 94 IPR013087 -
Pvu7g1634 153 SMART c2h2final6 28 50 IPR013087 -
Pvu7g1634 153 PANTHER ZINC FINGER PROTEIN ZAT5 12 147 - -
Pvu7g1634 153 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Pvu7g1634 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Pvu7g1634 153 SUPERFAMILY beta-beta-alpha zinc fingers 28 94 IPR036236 -
Pvu7g1634 153 Coils Coil 2 22 - -
Pvu7g1634 153 Pfam C2H2-type zinc finger 71 95 - -
Pvu7g1634 153 Pfam C2H2-type zinc finger 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g1634 Pvu-Chr7 38551904 38552756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g1634 20 143 C2H2 Transcription Factor Family AT2G37430 56.589 4.44e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g1634 zf-C2H2_6 3.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g1634 - - vra:106771374 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1771 1 43400258 43401729 Pvu7g1634 7 38551904 38552756 PCT